PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01443.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 87aa MW: 9153.38 Da PI: 10.5908 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.9 | 4.9e-32 | 35 | 85 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a++ifss+g+lyeys+ Zmw_sc01443.1.g00030.1.sm.mk 35 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALVIFSSRGRLYEYSN 85 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-34 | 28 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-29 | 29 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.66E-33 | 30 | 86 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-26 | 33 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.917 | 33 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-27 | 36 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-29 | 49 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-29 | 64 | 85 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSSSPGSGSV GGASAAAAAA AAAENKAAGK GKQIKRIENT TNRQVTFCKR RNGLLKKAYE 60 LSVLCDAEIA LVIFSSRGRL YEYSNNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
3mu6_A | 4e-19 | 30 | 84 | 3 | 57 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-19 | 30 | 84 | 3 | 57 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-19 | 30 | 84 | 3 | 57 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-19 | 30 | 84 | 3 | 57 | Myocyte-specific enhancer factor 2A |
6c9l_A | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-19 | 30 | 84 | 4 | 58 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960599.1 | 9e-37 | MADS-box transcription factor 58 | ||||
Swissprot | P29385 | 7e-34 | AGL5_ARATH; Agamous-like MADS-box protein AGL5 | ||||
TrEMBL | A0A368QCB7 | 2e-35 | A0A368QCB7_SETIT; Uncharacterized protein | ||||
TrEMBL | K3ZAE5 | 1e-36 | K3ZAE5_SETIT; Uncharacterized protein | ||||
STRING | Si023516m | 2e-37 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |