PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01433.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 127aa MW: 13758.9 Da PI: 11.0412 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.7 | 3.6e-24 | 75 | 125 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvtfskRr+g++KKA+ L + Cda++ vi+f +tg+ly++s+ Zmw_sc01433.1.g00060.1.am.mk 75 KRIENEANRQVTFSKRRAGVFKKAKGLATFCDAQIGVIVFTNTGQLYDFSN 125 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00404 | 6.2E-21 | 69 | 89 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.5E-26 | 70 | 126 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-21 | 70 | 126 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.913 | 70 | 127 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-21 | 76 | 123 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-21 | 89 | 104 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-21 | 104 | 125 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MHRFLIRRLT PAGLVTADVV FDLLSASRVI QTASLSLSLC GSSPRLSHFS LPSASPPATS 60 ALNLGLWCGG KTVLKRIENE ANRQVTFSKR RAGVFKKAKG LATFCDAQIG VIVFTNTGQL 120 YDFSNSW |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |