PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01432.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 604aa MW: 65836.2 Da PI: 10.5527

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01432.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.1	1.7e-27	507	560	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt eLH+rF+e+v+qL G + A+Pk+i+++m+v+g+t+ehv+SHLQkYRl Zmw_sc01432.1.g00120.1.am.mk 507 KARMVWTAELHHRFIEVVAQL-GDKAAVPKAIVQVMNVEGITREHVASHLQKYRL 560 68*****************.99****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.774	502	563	IPR017930	Myb domain
SuperFamily	SSF46689	1.4E-17	505	564	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-27	505	564	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-23	507	560	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-8	509	559	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MPRGELGAFR PFQAGEGRQR IEAALTEAST AGPSPSARRR PDPRQRDAVW LALFSWPDGR 60 RGRRPYSAAN NSSSSSYRCT SAPAGPGRVY WPAYEHGHGG QASRDSSRSC AVLTVVVGWS 120 IVRHSLRIFY CDRQFMGHPG HASETMVLAP TSMDVDEKQD AHGAALDRER RPAGRPAGTG 180 SPISPPAWLS TYLVDIYLRP RARRVRTLPS PLRRGMHRKA LSLTLQPAVG PFAAMMVRRV 240 QERQAKEAAV AVSDVTVRRS NSSAALSWRS LLFFSFLSLS CACVYPSLSD PVTHLLLAIG 300 PRVSCRFEQK TPGTTSTGPR AFRTRLLTVT TAHRSARLAQ LEQTPRAASA RAHRSIETAG 360 PTPSLSSAAG RTARVCAAPG ERNNNSSEYY VMSSPRGGRP RDSPSPSSTS SPPPPPDMGT 420 GRSECDRVLE WESGLPTAAE LTPLSRPLIP RALAAAFRIG GVAGASDSPT SQLSLPWDDD 480 DDDDEEEDRD REMENAATGG GKPGKKKARM VWTAELHHRF IEVVAQLGDK AAVPKAIVQV 540 MNVEGITREH VASHLQKYRL YLKRTRTTHA APPRLRVMPP THGFSFSSQQ STDASERSDY 600 CEKV

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MPRGELGAFR PFQAGEGRQR IEAALTEAST AGPSPSARRR PDPRQRDAVW LALFSWPDGR  60
RGRRPYSAAN NSSSSSYRCT SAPAGPGRVY WPAYEHGHGG QASRDSSRSC AVLTVVVGWS  120
IVRHSLRIFY CDRQFMGHPG HASETMVLAP TSMDVDEKQD AHGAALDRER RPAGRPAGTG  180
SPISPPAWLS TYLVDIYLRP RARRVRTLPS PLRRGMHRKA LSLTLQPAVG PFAAMMVRRV  240
QERQAKEAAV AVSDVTVRRS NSSAALSWRS LLFFSFLSLS CACVYPSLSD PVTHLLLAIG  300
PRVSCRFEQK TPGTTSTGPR AFRTRLLTVT TAHRSARLAQ LEQTPRAASA RAHRSIETAG  360
PTPSLSSAAG RTARVCAAPG ERNNNSSEYY VMSSPRGGRP RDSPSPSSTS SPPPPPDMGT  420
GRSECDRVLE WESGLPTAAE LTPLSRPLIP RALAAAFRIG GVAGASDSPT SQLSLPWDDD  480
DDDDEEEDRD REMENAATGG GKPGKKKARM VWTAELHHRF IEVVAQLGDK AAVPKAIVQV  540
MNVEGITREH VASHLQKYRL YLKRTRTTHA APPRLRVMPP THGFSFSSQQ STDASERSDY  600
CEKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	9e-22	507	563	1	57	Transcription factor LUX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	44	RRRPDPRQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1620	34	105