PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01431.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 725aa    MW: 77582.8 Da    PI: 7.1782
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01431.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.21.7e-902826771373
                          GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvs..elykalppsetse 71 
                                   l +lL+++Aea+s   ++ ela+ +L rl+e++s +g       +m+Rlaa+ft AL+  l +s +    +k  ++ + ++
  Zmw_sc01431.1.g00130.1.am.mk 282 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTGAtnapasNMERLAAHFTDALQGLLDGSHPvgAASKHAATAAPHQ 362
                                   579**********8557777***************9965888889*****************9666213445555666666 PP

                          GRAS  72 knsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150
                                   ++  ++l+a+++++++sP++kf+h+taNqaIleav+g++rvH++D+di +G+QW++L+qa+ sRp   +pp+lRiT+v ++
  Zmw_sc01431.1.g00130.1.am.mk 363 HHRGDVLTAFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHVVDYDIAEGVQWASLMQAMISRPdgVPPPHLRITAVLRN 443
                                   6699*************************************************************777799*********8 PP

                          GRAS 151 esgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231
                                     g +++++e+g+rLa fA+++g pf+f     ++ + ++  + r+ +gEal+ n+vl+          ++    ++L  +
  Zmw_sc01431.1.g00130.1.am.mk 444 GGGGARAVQEVGRRLAAFAASIGQPFSFGQCRIDSEDRFRSATVRMVKGEALVANCVLNQAAATTTVRRSTGSVASFLAGM 524
                                   888***************************9999999*********************887776555555557999***** PP

                          GRAS 232 kslsPkvvvvveqe.adhnse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                                    +l +k+v+vve++  d ++e           F++rf+e l+ ysa+ dslea++p++   r  vEr++l+++i  +v+ +
  Zmw_sc01431.1.g00130.1.am.mk 525 ATLGAKLVTVVEEDrGDAEKEddeggdaaagGFVARFMEELHRYSAVCDSLEAGFPTQIWVRGLVERVILAPNIAGAVSRA 605
                                   *************953333335678889999************************************************** PP

                          GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvsvSaW 373
                                    ++   + e  + W e+++  GF++vpls ++ +qa+lll  ++ dgy++ee s + +vlgWk r+L+s+S+W
  Zmw_sc01431.1.g00130.1.am.mk 606 YRAVDGDGEARGGWGEWMRGNGFRAVPLSCFNHSQARLLLGLFN-DGYTMEETSpNKIVLGWKARRLLSASVW 677
                                   ********************************************.******88626777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.973256658IPR005202Transcription factor GRAS
PfamPF035145.9E-88282677IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MTFAHQPSGR NRQGNAFRRP DPNSCMPGPA PRPLRLAPGH RRPVAVAGRR ELANPDARTS  60
PHLSPSALRP TTTRSSGPRT ATATAPSGRI FFCSNLLMAK PESFVYINKP LSCVLPSSAQ  120
IPAPSLPTDR SPLSPRAKTF PDSKPKQSHR TRTGINQAST MEVTMDDVAG ELEFSGCSST  180
TTSCSHEAWN SLSPVAEWGP FCRDDCGKDL HGLIEAMLCD GTLVGAAVDD DYDSIHPAMF  240
FREEACYYSN GSVPSSTTTM NPGTPVYDVD AQGDCPEKGL RLLHLLMAAA EALSGPHKSR  300
ELARVILVRL KEMVSHTGAT NAPASNMERL AAHFTDALQG LLDGSHPVGA ASKHAATAAP  360
HQHHRGDVLT AFQMLQDMSP YMKFGHFTAN QAILEAVAGD RRVHVVDYDI AEGVQWASLM  420
QAMISRPDGV PPPHLRITAV LRNGGGGARA VQEVGRRLAA FAASIGQPFS FGQCRIDSED  480
RFRSATVRMV KGEALVANCV LNQAAATTTV RRSTGSVASF LAGMATLGAK LVTVVEEDRG  540
DAEKEDDEGG DAAAGGFVAR FMEELHRYSA VCDSLEAGFP TQIWVRGLVE RVILAPNIAG  600
AVSRAYRAVD GDGEARGGWG EWMRGNGFRA VPLSCFNHSQ ARLLLGLFND GYTMEETSPN  660
KIVLGWKARR LLSASVWAPP PMSVPSSPAE GVLQSVVMAP VSGGVGRMEF DYIDSFLAEP  720
AYALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4829067927380Protein SCARECROW
5b3h_A1e-4829067926379Protein SCARECROW
5b3h_D1e-4829067926379Protein SCARECROW
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Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468140.20.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-149NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1E5V8410.0A0A1E5V841_9POAL; Nodulation-signaling pathway 2 protein
STRINGSb01g040270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]