PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01428.1.g00200.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 434aa    MW: 48404.1 Da    PI: 9.9333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01428.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.1e-1384171197
                                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                   ffkv+     ++++ + +p +fa+++ +   ++s  + led+ g +W+v+l  r ++    l+ GW++Fv ++ +  g+f+
  Zmw_sc01428.1.g00200.1.sm.mk  84 FFKVM--VGRFSES-MDIPPPFAKTIlD--MAGS-NIYLEDSFGLRWRVRL--RLRGAVLSLGHGWNNFVLDHAVSCGEFL 156
                                   66666..4555555.99******99952..2343.7***************..77777799******************** PP

                                   EEEE-SSSEE..EEEEE CS
                            B3  81 vFkldgrsefelvvkvf 97 
                                   vF+ + rs f  +v++f
  Zmw_sc01428.1.g00200.1.sm.mk 157 VFRQIARSVF--TVQMF 171
                                   ***9888888..77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-1980174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-1781174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.92981174IPR003340B3 DNA binding domain
CDDcd100171.24E-982171No hitNo description
PfamPF023625.7E-1184171IPR003340B3 DNA binding domain
SMARTSM010192.6E-1184174IPR003340B3 DNA binding domain
PROSITE profilePS508639.488339434IPR003340B3 DNA binding domain
SMARTSM010190.0029342434IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-12353431IPR015300DNA-binding pseudobarrel domain
CDDcd100176.59E-9353432No hitNo description
Gene3DG3DSA:2.40.330.102.5E-10368431IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAVTALKKEQ EDGVVHIDSG EDEEAEKVVK RRRKRKKKKA IDPRCTKRPC VDCTRRCARI  60
HGRVSSSSSG NNNKARPVPA VPSFFKVMVG RFSESMDIPP PFAKTILDMA GSNIYLEDSF  120
GLRWRVRLRL RGAVLSLGHG WNNFVLDHAV SCGEFLVFRQ IARSVFTVQM FAPSAIERLY  180
LCERNRRQSR KRKPRQKASS PRIQTGKIIK SNGGSCKRKR RADAQSEEVP DDCKMSAHLC  240
IDDSDVSDSA SELKCLGKSL KAPEAGESQE VSKALTTNQE GNVQRVLDGQ TEIADSCKIS  300
TEHPISDATE TEHVEDSKNN SEDLQTGSTE SGGVLALAAN KFSVAVPPPG QTWLELPSRL  360
PVIPRTKKQG RKVVVLKDPF KRLWPALYQC TPRFSGFITG WVEISRENSL REGDTCEFEL  420
SGKKEFSFQV RSGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038RRRKRKKKK
23236RKRKK
33238RKRKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972298.11e-119B3 domain-containing protein Os01g0905400 isoform X1
SwissprotQ5N6V08e-80Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A1E5W8C91e-118A0A1E5W8C9_9POAL; B3 domain-containing protein
TrEMBLA0A368REZ51e-118A0A368REZ5_SETIT; Uncharacterized protein
STRINGPavir.J19231.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]