PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01427.1.g00280.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 396aa MW: 41607.4 Da PI: 5.68

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01427.1.g00280.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.9	4.9e-17	274	308	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l Zmw_sc01427.1.g00280.1.sm.mkhc 274 CLHCESDKTPQWRTGPMGPKTLCNACGVRYKSGRL 308 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	2.9E-14	268	305	IPR013088	Zinc finger, NHR/GATA-type
SMART	SM00401	1.9E-17	268	318	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.413	268	304	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.23E-15	270	331	No hit	No description
CDD	cd00202	2.76E-13	273	320	No hit	No description
PROSITE pattern	PS00344	0	274	299	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	6.2E-15	274	308	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MEAATESGYY SGAGRERKGA GCVDHFDVDD LAVDDLLVLP YDDDDDEEGD GGGEAAALVD 60 VAGGGGGVVV KEEGVLGNLS TDSSTVTTAM DSCSNSFSGL ADGDFSGELC DPYEQLAELE 120 WLSTYMGEND DFATEDLQKL QLINGIPAGS FSSSAARVLP APAPHTTAAA SATTRQTGMS 180 LPEAPVPGKA RSKRFRPAPG NWSSHPLVLQ PAPASPPSPA STAILPAESG VSFHFLAKKP 240 SKSSKKKDAP PSSSPAQSPC GGSVSAASAE GRRCLHCESD KTPQWRTGPM GPKTLCNACG 300 VRYKSGRLVP EYRPAASPTF VTSKHSNSHR KVLELRRQKE VQHPLAAPPQ HHHQPHVIAG 360 GLVHMQSPLL FDAPPMMVGD DFLVTHHLGP DCRQLI

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MEAATESGYY SGAGRERKGA GCVDHFDVDD LAVDDLLVLP YDDDDDEEGD GGGEAAALVD  60
VAGGGGGVVV KEEGVLGNLS TDSSTVTTAM DSCSNSFSGL ADGDFSGELC DPYEQLAELE  120
WLSTYMGEND DFATEDLQKL QLINGIPAGS FSSSAARVLP APAPHTTAAA SATTRQTGMS  180
LPEAPVPGKA RSKRFRPAPG NWSSHPLVLQ PAPASPPSPA STAILPAESG VSFHFLAKKP  240
SKSSKKKDAP PSSSPAQSPC GGSVSAASAE GRRCLHCESD KTPQWRTGPM GPKTLCNACG  300
VRYKSGRLVP EYRPAASPTF VTSKHSNSHR KVLELRRQKE VQHPLAAPPQ HHHQPHVIAG  360
GLVHMQSPLL FDAPPMMVGD DFLVTHHLGP DCRQLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969927.1	1e-140	GATA transcription factor 12
TrEMBL	A0A0A9ERW1	1e-139	A0A0A9ERW1_ARUDO; Uncharacterized protein
STRING	Si001735m	1e-140	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3025	31	78