PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01421.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 807aa MW: 84775.2 Da PI: 10.0128

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01421.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	207	250	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 W++eEd l+ a++++G g+W+ I + + +Rt q+ rw Zmw_sc01421.1.g00260.1.sm.mkhc 207 TWSKEEDVDLAAAIQKYGEGNWEIILDKCNfrSTRTSDQLSQRW 250 7***************************************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-10	199	252	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.311	200	259	IPR017930	Myb domain
SuperFamily	SSF46689	7.9E-11	203	262	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-6	204	256	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-7	207	250	IPR001005	SANT/Myb domain
CDD	cd11660	2.25E-14	208	255	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence Send to blast
MAATTAPAAG MGKGKRKRPL SEDDVYLILH RYAPATILTA LQEVAEHAQG RRIDWKALVG 60 KSATGITSAR EYQMLWRHFA YQHELAESID AGSSPLGDDS DLECELEPVP NPSKEVLSEA 120 SSLAKILISG SSHEQASGHR VNLETSAQNS ANGKIVRVPS DKQLAQNQRL TNVSGPISNS 180 KQTSQTGPSP DPLDANGASK KKKKIKTWSK EEDVDLAAAI QKYGEGNWEI ILDKCNFRST 240 RTSDQLSQRW ALISKRPGLS KPATTKQVSI TSSEERMATR KAFSMAVDYN PCTRKPSAVR 300 LGAQQFSSQH TSTVFGTTIP EIKSAAAPFA APRQAPVPIQ APVTMPLPVT VQVLAPVQQA 360 QQAPAQVPPP KAPNASNKTR NNSKKQVVPQ NPPVVSCSIQ AAAIAAGGRI ATPTAAANHL 420 KATQSKNAVH IKTRVAASSK SSTCSKGSNI VVEPRTQIGG AEHIELSNTA ATISAPSILL 480 THAAQQILDI SEVSAANPPG PPSGAHFTDT KKALSASAVP ASCDSEEQDD DDTICMVTME 540 DLFPEDANQP ESVNPKEKQP EAIGPRERQQ DSIDLKEKQQ GVLGLKTKQP ETKNLRVEGI 600 VDSKDADMLE FDQFVASQGG TSVKMDYLDT SNTVRSAPTT QGSTGSQKKQ LKSVPAAGRG 660 NSIYSAAPSS GKKTKVSHPV SLMPTGTPWV NVSAHSTAQN KPVEKKTAAP ATSSGQNLLM 720 KKQAVNTKGN QTPNSVAVGV TSVAPGSSMA STVVNPPGSS QAGTVVNGAS KANPPGSSQT 780 STLVNGSSKV NPPGPSQASK VVSGVSK

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence Send to blast

MAATTAPAAG MGKGKRKRPL SEDDVYLILH RYAPATILTA LQEVAEHAQG RRIDWKALVG  60
KSATGITSAR EYQMLWRHFA YQHELAESID AGSSPLGDDS DLECELEPVP NPSKEVLSEA  120
SSLAKILISG SSHEQASGHR VNLETSAQNS ANGKIVRVPS DKQLAQNQRL TNVSGPISNS  180
KQTSQTGPSP DPLDANGASK KKKKIKTWSK EEDVDLAAAI QKYGEGNWEI ILDKCNFRST  240
RTSDQLSQRW ALISKRPGLS KPATTKQVSI TSSEERMATR KAFSMAVDYN PCTRKPSAVR  300
LGAQQFSSQH TSTVFGTTIP EIKSAAAPFA APRQAPVPIQ APVTMPLPVT VQVLAPVQQA  360
QQAPAQVPPP KAPNASNKTR NNSKKQVVPQ NPPVVSCSIQ AAAIAAGGRI ATPTAAANHL  420
KATQSKNAVH IKTRVAASSK SSTCSKGSNI VVEPRTQIGG AEHIELSNTA ATISAPSILL  480
THAAQQILDI SEVSAANPPG PPSGAHFTDT KKALSASAVP ASCDSEEQDD DDTICMVTME  540
DLFPEDANQP ESVNPKEKQP EAIGPRERQQ DSIDLKEKQQ GVLGLKTKQP ETKNLRVEGI  600
VDSKDADMLE FDQFVASQGG TSVKMDYLDT SNTVRSAPTT QGSTGSQKKQ LKSVPAAGRG  660
NSIYSAAPSS GKKTKVSHPV SLMPTGTPWV NVSAHSTAQN KPVEKKTAAP ATSSGQNLLM  720
KKQAVNTKGN QTPNSVAVGV TSVAPGSSMA STVVNPPGSS QAGTVVNGAS KANPPGSSQT  780
STLVNGSSKV NPPGPSQASK VVSGVSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952835.1	0.0	nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBL	K3YPR8	0.0	K3YPR8_SETIT; Uncharacterized protein
STRING	Si016260m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54