PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01421.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 498aa MW: 53277.4 Da PI: 10.2499

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01421.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.8	3e-11	272	318	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +h Er RR+r+++ f+eL+ llP + +K +Ka+i +A+ +Ik L Zmw_sc01421.1.g00190.1.am.mk 272 SHIFTERERRKRMRNMFAELKALLPDvP-----EKADKATIIGEAISFIKVL 318 67889*******************77.....9*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-14	265	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.51E-11	266	319	No hit	No description
PROSITE profile	PS50888	14.113	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-14	271	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	272	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-8	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MDLVGVGHDG SSQESLERHG RRRPEKQSRL TELDDAPAHA HCGGAAESSR IRKLRCRSSG 60 SAPALLLARG GDVELAAASS HHHRASISQE GSTRPSLPLQ VNRWLKARWS SSKIHRAFGE 120 AGNGDERRNG RTPRAKSCCL LSSDRRKREK LPVTIKRGRR ALFPSPKHTT VLGMASQGTD 180 ASSDHGSAPP APGVTVTALS PGENSNSGPC AGVPVVAEED AGKGKDVVVE YGSAGSGHSD 240 ARVLPKGKRS AAEALAREFE DAASGRKKLM SSHIFTERER RKRMRNMFAE LKALLPDVPE 300 KADKATIIGE AISFIKVLEG NVTNLQKRKQ DLVLARLAAA AVVNHVAATS APPPPGTPLA 360 AAASSDDLPR GWAWLPKQQE QKPAASPVGF QSWCGTNVVL SVSKDDALIS VSAPNHPGLL 420 VLLMSVLLKH RLDVLTAHVE SDGDRRLYSF HARVILTFGS SCNDQVNAEA VRMLDGKPPA 480 SEDIYKLAVS EIIIWLST

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MDLVGVGHDG SSQESLERHG RRRPEKQSRL TELDDAPAHA HCGGAAESSR IRKLRCRSSG  60
SAPALLLARG GDVELAAASS HHHRASISQE GSTRPSLPLQ VNRWLKARWS SSKIHRAFGE  120
AGNGDERRNG RTPRAKSCCL LSSDRRKREK LPVTIKRGRR ALFPSPKHTT VLGMASQGTD  180
ASSDHGSAPP APGVTVTALS PGENSNSGPC AGVPVVAEED AGKGKDVVVE YGSAGSGHSD  240
ARVLPKGKRS AAEALAREFE DAASGRKKLM SSHIFTERER RKRMRNMFAE LKALLPDVPE  300
KADKATIIGE AISFIKVLEG NVTNLQKRKQ DLVLARLAAA AVVNHVAATS APPPPGTPLA  360
AAASSDDLPR GWAWLPKQQE QKPAASPVGF QSWCGTNVVL SVSKDDALIS VSAPNHPGLL  420
VLLMSVLLKH RLDVLTAHVE SDGDRRLYSF HARVILTFGS SCNDQVNAEA VRMLDGKPPA  480
SEDIYKLAVS EIIIWLST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	26	GRRRPEKQ
2	144	149	RRKREK
3	265	282	RKKLMSSHIFTERERRKR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91