PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01419.1.g00200.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 666aa    MW: 70575.4 Da    PI: 9.4085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01419.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-16471516555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Zmw_sc01419.1.g00200.1.am.mk 471 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 516
                                   *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.025466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-19469539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17471528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-17471520No hitNo description
PfamPF000101.7E-13471516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAPAKFGSST RSRRNKSKTG SNTRDEQASR LRATTRWLSH RSYRRQPARH ALNLPYAGSS  60
DWERWPRGHV EAEAATCPPP PHKAQAPRGL VFLRAVTLTA PASTYPHARS RPSPIDGARC  120
MAPATHHPAY PPPPVLKYLL LRAIRSPRPP HRASTRALAA RSNRALPASL TAAPVSSRLT  180
SSHATGRGGG AAEMNQCVPS WDLDDAAAGG LNTASAATDG VHHRAGVDGA GYYDVAELTW  240
EKGNISSHGL LNRPAPTKCP PAASSTPLQA LGGGGEPAGG GDRETLEAVV GEAAARSHFP  300
AQPSLPTTPW LGVGVPLPAE ALVPCATRDD QAAEEEARRK RARGVGEDGH GLVCASQGST  360
APGRRGESAL PELDAACGIG DDDVCGFTTT TNNSTSLDRD DNKGSPDTEN TSIGGGASDS  420
RCFSLRSQAN CLLITLPRDG LCDEGENVVI NGEPAMRSSV STKRSRAAAI HNESERKRRD  480
RINQKMKTLQ KLVPNSSKTD KASMLDEVID YLKQLQAQVQ VMSRMSSMMM PMAMPQLQMS  540
VMAQMAQMAQ MAQMAQGMMN MGSLSQPGYV PPPMMHPPPP PFVPLPWDAG AAGASSGAGA  600
VADRVPQPGG SATITDAFAA FLACQQAQQN GQQQQQPGGM EAYNRMLAMW HKLSQQQPSQ  660
PSNTKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1474479ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660002.11e-151transcription factor UNE10 isoform X2
TrEMBLA0A368SN181e-149A0A368SN18_SETIT; Uncharacterized protein
STRINGPavir.Ia02188.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140