PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01408.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 350aa    MW: 37201.6 Da    PI: 6.5215
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01408.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17174228256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Zmw_sc01408.1.g00140.1.sm.mk 174 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 228
                                   788899***********************************************98 PP
2HD-ZIP_I/II126.51.2e-40174264192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+
  Zmw_sc01408.1.g00140.1.sm.mk 174 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQ 254
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   ke +eLr +lk
  Zmw_sc01408.1.g00140.1.sm.mk 255 KELAELR-ALK 264
                                   ******9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17160224IPR009057Homeodomain-like
SuperFamilySSF466891.58E-18161231IPR009057Homeodomain-like
PROSITE profilePS5007117.086170230IPR001356Homeobox domain
SMARTSM003897.4E-16172234IPR001356Homeobox domain
CDDcd000866.89E-17174231No hitNo description
PfamPF000463.9E-15174228IPR001356Homeobox domain
PROSITE patternPS000270205228IPR017970Homeobox, conserved site
PfamPF021831.3E-10230264IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.5E-24230273IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MELGLSLGDT MADAGRDLVL GLGMGMGVVG REDEGGERRS KRDHEEAASP ARMEPELGAG  60
RCRRSSPEPP ARLTLLSMVP SLGLPWPSPE TGHLEASTRG FDVNRAPSCA AGAAGEEDEE  120
QDDAGAGGAA VSSSPNNSAG SFPTDFSARG QTVPGGGDRA CSRASDEDDG GSSRKKLRLS  180
KEQSAFLEES FKEHATLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK  240
RCCETLTEEN RRLQKELAEL RALKTVNPFY MHLPATTLSM CPSCERVAST NSAAASGASA  300
PQQATTPARP PSSGCIGDSA PEPRPSSFAA LFSSPLKRPL AAQPQAPASL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178SRKKLRL
2222230RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802237.11e-137homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE21e-136HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A1E5V7401e-145A0A1E5V740_9POAL; Homeobox-leucine zipper protein HOX11
STRINGPavir.J20342.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363