PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01407.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family E2F/DP
Protein Properties Length: 370aa    MW: 39812.7 Da    PI: 10.5292
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01407.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP41.22.6e-13213258858
                       E2F_TDP   8 lltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnl 58 
                                    l+ +f++l+ +++ ++v l+++ak+L    v  +rRRiYDi+NVLe++++
  Zmw_sc01407.1.g00010.1.am.mk 213 RLSCSFVALYDREDVEAVGLDDAAKRL---GV--ERRRIYDIVNVLESVGV 258
                                   58899******9999************...**..**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-14169184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.8E-18173316IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-10213258IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.78E-8213258IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-14218258IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MPATGWGPAG PIRPRPTRWA SLADKRAPTA TWPRHQIHRI SAPATPSPSR PGNMKSRSSR  60
AGAEPEAEFE KRRAAHPPRR APNSPTAPRE LSQIHGGEKK ISEIYSSPRR ASEPSKPSEL  120
ASRAMDAAAA AAVAGPSSSS GAGASAQPQP KVPQAAVQGA AASKSCRHHA YSRKQKSLGL  180
LCSKCAPFSF RSRLSLARDA RSGRSVALTQ VSRLSCSFVA LYDREDVEAV GLDDAAKRLG  240
VERRRIYDIV NVLESVGVRP ASQLNSSRSV LLERGFLSRS SESWCAYQIN TFLGWGGGDV  300
VQILVRRAKN RYAWLGFGGV TAALKELKAS DDEDDDKLGD ADEDNENEKL SQSVDNLSDK  360
PGALPCRLRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436789.17e-54E2F transcription factor-like E2FE isoform X2
RefseqXP_021305371.17e-54E2F transcription factor-like E2FE isoform X1
TrEMBLC5Z7K62e-52C5Z7K6_SORBI; Uncharacterized protein
STRINGSb10g008800.13e-53(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884