PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01405.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 369aa MW: 40668.6 Da PI: 5.8924

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01405.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46	1.2e-14	153	196	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+teE+ +++++ + +G g+Wk Iar++ k+Rt+ q+ s+ qky Zmw_sc01405.1.g00060.1.am.mk 153 WSTEEHRQFLRGLRVYGRGDWKNIARHFVKTRTAVQVSSHAQKY 196 *******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.912	145	201	IPR017930	Myb domain
SuperFamily	SSF46689	3.01E-16	146	201	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-13	149	199	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.8E-11	149	198	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-12	149	199	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-10	153	196	IPR001005	SANT/Myb domain
CDD	cd00167	1.73E-10	153	196	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MAMAAAADMG PLFTGDWSAS DDVATVKYLI VMHTNNAIIS DGVAGTLNSK HKNIVDILHK 60 QFPWNDRRQV TDLYFDVVVE MLQGPEMMAT GGIDLVNDNF GVMPLPLQLP VVEDPVMDNM 120 DVLLCPVNVV DTTRARRQPP GYPRAVRNKG RFWSTEEHRQ FLRGLRVYGR GDWKNIARHF 180 VKTRTAVQVS SHAQKYYRRQ ESGATRQRYS INDVGLYDAE PWAAPTNNSS GSWETLSFAG 240 GDYNNSNGYI AFGQQAPAQP ALAMNNPAHA MNNPALAMNN TAPAMNYPAL AMNNPIPAMN 300 NNPAPVWSPF QYNAGEASTG QAAWTTGDQQ MGYAAAAPPP AMEETGSFLS SGDQQGFFAT 360 QQWMNNMYY

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MAMAAAADMG PLFTGDWSAS DDVATVKYLI VMHTNNAIIS DGVAGTLNSK HKNIVDILHK  60
QFPWNDRRQV TDLYFDVVVE MLQGPEMMAT GGIDLVNDNF GVMPLPLQLP VVEDPVMDNM  120
DVLLCPVNVV DTTRARRQPP GYPRAVRNKG RFWSTEEHRQ FLRGLRVYGR GDWKNIARHF  180
VKTRTAVQVS SHAQKYYRRQ ESGATRQRYS INDVGLYDAE PWAAPTNNSS GSWETLSFAG  240
GDYNNSNGYI AFGQQAPAQP ALAMNNPAHA MNNPALAMNN TAPAMNYPAL AMNNPIPAMN  300
NNPAPVWSPF QYNAGEASTG QAAWTTGDQQ MGYAAAAPPP AMEETGSFLS SGDQQGFFAT  360
QQWMNNMYY

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133