PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01404.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 226aa MW: 24112.8 Da PI: 7.8471 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.4e-30 | 110 | 168 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh Zmw_sc01404.1.g00040.1.am.mkhc 110 LDDGFRWRKYGKKAVKSSPNPRNYYRCSVEGCGVKKRVERDRDDPRYVVTTYDGVHNHA 168 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-31 | 97 | 168 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-27 | 102 | 168 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.699 | 105 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-34 | 110 | 169 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-24 | 111 | 167 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAASLGLGGH EAYPPAASLC FPPDLAVANN CAATVAEDCF PEFGAVFPPS QDYYDWTPHQ 60 VFAENEMSMR FVDAGRRRMV STAAGTGGNG CSRRPSSRIG FRTRSEVDVL DDGFRWRKYG 120 KKAVKSSPNP RNYYRCSVEG CGVKKRVERD RDDPRYVVTT YDGVHNHAAG AGAGAAGGHH 180 NAPVQQALAP YAPAGTVTGA PPPPEVWGTM QLHAAAAMAN SSESSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-27 | 100 | 167 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-27 | 100 | 167 | 7 | 74 | Probable WRKY transcription factor 4 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968484.1 | 4e-60 | WRKY transcription factor WRKY24 | ||||
TrEMBL | K3XL48 | 1e-58 | K3XL48_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ea00274.1.p | 2e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |