PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01402.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 440aa MW: 47179.9 Da PI: 8.7863

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01402.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.4e-31	265	320	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a+ qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ Zmw_sc01402.1.g00270.1.sm.mk 265 KPRRCWAPELHRRFLQALLQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 320 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.466	262	322	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-27	262	323	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.49E-16	263	323	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-25	265	320	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MEMDPPPPSL HAAAAAGDRR RCREYLLALE EERRKIQVFQ RELPLCLDLV TQTIERMKSQ 60 MDGIGSEVTV SDHGPVLEEF MPLKPIRSLS SSEEHDSARD ASGGVGRKEE AADTPAETKK 120 ATPDWLQSVP LWSQEPQQRS ASDPHKVHTD MFKPCSLPVF RLQIITPLTI DTSQLYQELP 180 CKPVALNARK SGGAFQPFEK EKRVELPASS TTAAASSTVA GDSGDDDKGA SVDTEKRSGE 240 KETSTNKDAK GAKDKEGQSS SSSRKPRRCW APELHRRFLQ ALLQLGGSHV ATPKQIRDLM 300 KVDGLTNDEV KSHLQKYRLH TRRPNSTGQS SSASAAPPAP QFVVVGGIWV PPPEYAAAAA 360 AVAAAAAAQP PVQQLAANTS GGASTVYAPV ATLPSAPQPR SQQLVKKQPN RCSDGRRRGS 420 AGETSSASPA VSSSSQTTSA

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MEMDPPPPSL HAAAAAGDRR RCREYLLALE EERRKIQVFQ RELPLCLDLV TQTIERMKSQ  60
MDGIGSEVTV SDHGPVLEEF MPLKPIRSLS SSEEHDSARD ASGGVGRKEE AADTPAETKK  120
ATPDWLQSVP LWSQEPQQRS ASDPHKVHTD MFKPCSLPVF RLQIITPLTI DTSQLYQELP  180
CKPVALNARK SGGAFQPFEK EKRVELPASS TTAAASSTVA GDSGDDDKGA SVDTEKRSGE  240
KETSTNKDAK GAKDKEGQSS SSSRKPRRCW APELHRRFLQ ALLQLGGSHV ATPKQIRDLM  300
KVDGLTNDEV KSHLQKYRLH TRRPNSTGQS SSASAAPPAP QFVVVGGIWV PPPEYAAAAA  360
AVAAAAAAQP PVQQLAANTS GGASTVYAPV ATLPSAPQPR SQQLVKKQPN RCSDGRRRGS  420
AGETSSASPA VSSSSQTTSA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954868.3	1e-159	transcription factor NIGT1
Swissprot	Q6Z869	1e-132	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A0A9G3F3	1e-175	A0A0A9G3F3_ARUDO; Uncharacterized protein
STRING	Si019945m	1e-160	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]