PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01397.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 237aa MW: 25446.3 Da PI: 11.5471 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 23.4 | 8.4e-08 | 161 | 180 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C+ C++t Tp+WR gp g++ Zmw_sc01397.1.g00080.1.am.mk 161 CVECRATATPMWRGGPTGPR 180 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 3.0E-5 | 160 | 178 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 9.46 | 161 | 219 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MQIRHSLGIR TGPKKLPGAA KGRAPLSNLR GAHIQRPIHP SVSVVSISKL YSTLLLAELP 60 ATLGWTLLAL LPTPPLSPKQ SNITITWTRP AGPDQNSHGL LYSTRYSSGP PSPAFPDQVY 120 FPPSRTTLTR LGGSLCRACL LQAIGIGVAA AAAPEERRPF CVECRATATP MWRGGPTGPR 180 VSKLSVFRFS PHPVDRFLFP LPSSGGDDES SPRSIMVQRG RSSRSIFADT SRKSSCS |