PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01387.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 459aa MW: 50797 Da PI: 10.2616 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.9 | 1.6e-30 | 184 | 238 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY+eClkNhAa+ Gg+a+DGCgEfmp+ ge+g+ aal+C+ACgCHRnFHR+e++ Zmw_sc01387.1.g00020.1.am.mk 184 EVRYRECLKNHAAAFGGTATDGCGEFMPA-GEDGSLAALRCSACGCHRNFHRKESS 238 69**************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.9E-28 | 185 | 237 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-28 | 186 | 236 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-20 | 186 | 237 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.225 | 187 | 236 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE pattern | PS00028 | 0 | 223 | 246 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 299 | 372 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-16 | 302 | 371 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.6E-25 | 311 | 367 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 459 aa Download sequence Send to blast |
MDALSSSLDT TPRFVLFHSL QFLLPFFFFL LSIFLFLLNG ILLASLPLPF VPPLLEQWKE 60 ELIPFVRAGC WTGVAVLCGW SSKEVSKAGP CKSSRGGKGA KQASKASRMD FSRMQSELPM 120 AMHAGGSRYL GLHHHHAHEQ PQQQQHNHGA NGREMSPREV EEEAKNRQAL AVVPVATGAG 180 GGGEVRYREC LKNHAAAFGG TATDGCGEFM PAGEDGSLAA LRCSACGCHR NFHRKESSDG 240 HGRPLHRHQQ LTGDPLSPLH HRGLLVAAAP TRMVMPLSAA HPHPHHHATT SSESDDARQR 300 CDPHQQPAAT RKRFRTKFTV EQKARMLGFA EAAGWRLQRL EDAAVQRFCQ EVGVKRRVLK 360 VWMHNNKHTL ARRCHGDQDQ QQLHLPPAGD DGGGLPHLES GRSPAPQQQV QLRLENKHPA 420 LLLLRLLRLQ RLRPRVGSWH WQAEQMQAGM AGGCRGGRM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 6e-22 | 310 | 369 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443023.1 | 1e-109 | zinc-finger homeodomain protein 3 | ||||
Refseq | XP_021321592.1 | 1e-109 | zinc-finger homeodomain protein 3 | ||||
Swissprot | Q2QW44 | 8e-68 | ZHD3_ORYSJ; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | C5YTM1 | 1e-107 | C5YTM1_SORBI; Uncharacterized protein | ||||
STRING | Sb08g006490.1 | 1e-108 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |