PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01384.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 538aa MW: 55746.9 Da PI: 6.8031

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01384.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.9	3.7e-34	184	278	2	82
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............sss 68 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l + + Zmw_sc01384.1.g00130.1.sm.mk 184 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDRLEVLpawqptatatnaaaAAA 264 79**************************************************************66554443333222111 PP TCP 69 saseceaesssssa 82 ++s++ ++s ++s+ Zmw_sc01384.1.g00130.1.sm.mk 265 PSSSTHPDSAENSD 278 11111111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-31	184	281	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.211	186	244	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MRIAKVAAAA VAAANQAGDL DPRHQHRVAH GGDGAGGGGG EADEQQQQQH QRLLQLHQEG 60 QDQEPPSVPV FQLQHMQAAA LRQPASSAEY ALLAPMGDAG QSHHHHHGFQ PQLLSFGGVG 120 QHHQLHQFTA QAPAAGSASH SRSRAAAAGG GGGGGEIVPA SQSRVRSGGG EIVAVQGGHI 180 VRSTGRKDRH SKVCTARGPR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLIKNAKEA 240 IDRLEVLPAW QPTATATNAA AAAAPSSSTH PDSAENSDDQ AQAITVAHTG FDFPSGAAGA 300 SGGGGTGFLP SSLDSDSIAD TIKSFFPMGG TGGGEASSST AGAQSSAMSF QSYTPDLLSR 360 TGGHSQELRL SLQSLPDPPM FQHQHPQPEH DRSHGHGSSQ QALFPGAGSY SFGGGAMWGA 420 EPAQSQRLVP WNVPDPGGGY LFNVSQQAAH MQAALGGQSQ FLFQRGPLQS SNQPSDRGWP 480 ETVEADNPMS AIGFAPGVGF SGFRIPARMQ GEEEHNGGGG GSGEKPPPPP SVSSASHH

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MRIAKVAAAA VAAANQAGDL DPRHQHRVAH GGDGAGGGGG EADEQQQQQH QRLLQLHQEG  60
QDQEPPSVPV FQLQHMQAAA LRQPASSAEY ALLAPMGDAG QSHHHHHGFQ PQLLSFGGVG  120
QHHQLHQFTA QAPAAGSASH SRSRAAAAGG GGGGGEIVPA SQSRVRSGGG EIVAVQGGHI  180
VRSTGRKDRH SKVCTARGPR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLIKNAKEA  240
IDRLEVLPAW QPTATATNAA AAAAPSSSTH PDSAENSDDQ AQAITVAHTG FDFPSGAAGA  300
SGGGGTGFLP SSLDSDSIAD TIKSFFPMGG TGGGEASSST AGAQSSAMSF QSYTPDLLSR  360
TGGHSQELRL SLQSLPDPPM FQHQHPQPEH DRSHGHGSSQ QALFPGAGSY SFGGGAMWGA  420
EPAQSQRLVP WNVPDPGGGY LFNVSQQAAH MQAALGGQSQ FLFQRGPLQS SNQPSDRGWP  480
ETVEADNPMS AIGFAPGVGF SGFRIPARMQ GEEEHNGGGG GSGEKPPPPP SVSSASHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-20	191	244	1	54	Putative transcription factor PCF6
5zkt_B	3e-20	191	244	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310872.1	0.0	transcription factor PCF5
Refseq	XP_021310873.1	0.0	transcription factor PCF5
Swissprot	A2WM14	0.0	PCF5_ORYSI; Transcription factor PCF5
TrEMBL	A0A3L6R0N0	0.0	A0A3L6R0N0_PANMI; Uncharacterized protein
STRING	AC205574.3_FGP006	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5839	33	55