PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01379.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 461aa    MW: 48623.4 Da    PI: 10.3671
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01379.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1781.8e-24242331190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 
                                     +fY+ Y+ +vGF+vrk++ ++sk++geit+r+f Cs+eg+r+  k + +++r + + +rtgC+a+l ++++k d+k ev
  Zmw_sc01379.1.g00150.1.am.mkhc 242 EFYRYYGWMVGFNVRKEYGNRSKKTGEITSRRFSCSREGHRAGAKAA-SNKRLPMPDSRTGCHAHLIIRRRKqDSKLEV 319
                                     6******************************************9998.9999******************999****** PP

                            FAR1  79 tkleleHnHela 90 
                                     + +e  HnH+l+
  Zmw_sc01379.1.g00150.1.am.mkhc 320 YVFEPRHNHPLF 331
                                     **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-21242331IPR004330FAR1 DNA binding domain
PROSITE profilePS508119.328257331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDPTARVSDQ VRPSSPSPEM NSSEADPHPA PPAAAAQSAE PGSQGSIPSP QKPNPTIPTP  60
PPRNASVATA TAESSRNAPE PTTATTAPSL KAPGVTTAAP CRKSSRAAST TTAATAKPSR  120
NTPGPTTATT APSLKALGVT TAAPSRKASG ATSTTAVACL RNPSGATTSA AAVSRIPSAP  180
ATTTTTNAIS GYPSVATAAV AAQNPLGTAA VGSVPRGTAP TRPEDYTPQM GMEFESEQEA  240
YEFYRYYGWM VGFNVRKEYG NRSKKTGEIT SRRFSCSREG HRAGAKAASN KRLPMPDSRT  300
GCHAHLIIRR RKQDSKLEVY VFEPRHNHPL FDPSSMPCPF RGTAMPNGVP TPDYLANVGQ  360
ENLREKSSKA RTKESKKGQK NKIQPRNCIE KGLRKKQKIH AEQSSMPYPL SNASGQPGNA  420
LFQGIDLSNP TGPINYEGMH SGLHLSFTPE LGFDLSHLSD K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880889.11e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880890.11e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880891.11e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880892.11e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880893.11e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880894.11e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880895.11e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880896.11e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880897.11e-60protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880898.11e-60protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A0D9ZKQ71e-93A0A0D9ZKQ7_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZKQ81e-93A0A0D9ZKQ8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G12170.12e-94(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15895914