PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01374.1.g00250.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 295aa MW: 32720.2 Da PI: 10.2996

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01374.1.g00250.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	101	119	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cg++F+ ++ L rH Zmw_sc01374.1.g00250.1.am.mk 101 CRVCGRRFRERDALLRHFE 119 *****************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.988	99	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	101	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MLPPLSNLRR RLMATAPKFL APPLLRSLST TTAPPARKPT TAVAILWDLA ASRPPSTLPL 60 YDAAVRLHLA ATSFGRLHLS AAFLHPSHRL HAPAAVSTHL CRVCGRRFRE RDALLRHFEA 120 IHTREHAKRL ARIDSARGGR RVXXXXXXXX XXXXXXXXXX XXXAQQVLDE RSVDCLMLVS 180 AREELVSLLP VAKERGVRSV VIGGESGLAR WADVGFSWSD VVAGKARKAA PSVSEKWRDR 240 DVLKGLEWRY EGDDDEEVVV FEDADEDSVD KLVGRAKGRP WWKLDSDGEG SSVGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823075.1	1e-137	uncharacterized protein LOC112898963
TrEMBL	A0A2T8ICM7	1e-135	A0A2T8ICM7_9POAL; Uncharacterized protein
STRING	Pavir.J22986.1.p	1e-132	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12234	20	23