PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01366.1.g00290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 401aa    MW: 45470.2 Da    PI: 11.7799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01366.1.g00290.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-18291338148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ +++q+G g+W++ +++ g++R++k+c++rw +yl
  Zmw_sc01366.1.g00290.1.am.mk 291 KGPWTPEEDQKLLAYIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL 338
                                   79********************************************97 PP

2Myb_DNA-binding54.23.4e-17344389148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Zmw_sc01366.1.g00290.1.am.mk 344 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 389
                                   89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-25283341IPR009057Homeodomain-like
PROSITE profilePS5129418.639286338IPR017930Myb domain
SuperFamilySSF466893.29E-30288385IPR009057Homeodomain-like
SMARTSM007171.6E-15290340IPR001005SANT/Myb domain
PfamPF002491.0E-16291338IPR001005SANT/Myb domain
CDDcd001671.82E-11293338No hitNo description
PROSITE profilePS5129426.333339393IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-26342393IPR009057Homeodomain-like
SMARTSM007175.8E-17343391IPR001005SANT/Myb domain
PfamPF002492.2E-16344389IPR001005SANT/Myb domain
CDDcd001672.15E-11346389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MRADRTALLV QAAEHDDEHS RNVGLLLMVG WRVASFSEAA TSRCQRHSKV TKRLNCGSSD  60
EARSSRDPET SLCLLPRRKL AASRQMQSNL LLPENTSVWS CNSAYPRTPS RACVRFQDSR  120
RGRPVRLWAR SDESSRAART GRAPNAVSIY RPRWRVGTPR YVRAWPTSAA PTRRVRLGRR  180
RTSPRNRARR DLIDLNGGVQ TEAGRRGVRC NSEPSCGRTV RLTCGAHLVR GRVLVARKPT  240
KILVQRWAVI TSEYTELLRP ATLPSSHSAI TGLSARMGRS PCCEKEAGLK KGPWTPEEDQ  300
KLLAYIEQHG HGCWRSLPAK AGLRRCGKSC RLRWTNYLRP DIKRGKFTLQ EEQTIIQLHA  360
LLGNRWSAIA THLPKRTDNE IKNYWNTHLK KRLARMGIDP V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-262893935108B-MYB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7219622