PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01358.1.g00220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 199aa MW: 21079.9 Da PI: 6.1139 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.2 | 3.3e-32 | 61 | 116 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Zmw_sc01358.1.g00220.1.sm.mk 61 KARRCWSPELHRRFVAALQRLGGAQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 116 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.719 | 58 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 59 | 119 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-18 | 59 | 119 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-26 | 61 | 116 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-7 | 63 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MPLNNGLQAA SARPTEAATP LPDLSLSSPA TDGSCPAAPS ATSSAVTDAG AAQRQQQGQR 60 KARRCWSPEL HRRFVAALQR LGGAQAATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRS 120 SSSDGTVDGQ AATTLWSGPE EQQQQYTTSQ HSTSQSGSPQ GPLQLTVSSR AVSVTAGGDS 180 CYDDGDEEED EKAESRSSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-15 | 61 | 114 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-15 | 61 | 114 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-15 | 61 | 114 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-15 | 61 | 114 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809801.1 | 3e-74 | transcription factor NIGTH1-like | ||||
TrEMBL | A0A0A9CL96 | 5e-82 | A0A0A9CL96_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ca02525.1.p | 4e-77 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |