PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc01354.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 859aa MW: 93303.9 Da PI: 10.4012 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 2e-11 | 36 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I+d r +r++lg+f + Aa+a++ a+++++g Zmw_sc01354.1.g00140.1.am.mk 36 SRFKGVVPQP-NGRWGAQIYD------RhTRVWLGTFPDEGAAARAYDVAARRYRG 84 6899**8788.8*********......44**********669************98 PP | |||||||
2 | B3 | 95.8 | 2.9e-30 | 153 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k+ tpsdv+k++rlv+pk++ae+h g +++ l +ed++g++W+++++y+ +s++yvltkGW++Fv+++g Zmw_sc01354.1.g00140.1.am.mk 153 FEKTVTPSDVGKLNRLVVPKHHAEKHfplkrapdAGTGGKGVLLNFEDSEGKVWRFRYSYWTSSQSYVLTKGWSRFVREKG 233 99*************************999988844445899*************************************** PP --TT-EEEEEE-SS.SEE..EEEEE-S CS B3 74 LkegDfvvFkldgr.sefelvvkvfrk 99 +++gD+v+F+++ +e++l++++++k Zmw_sc01354.1.g00140.1.am.mk 234 IRAGDTVTFYRSAYgQEKQLLIGFRKK 260 **********99776888889888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-5 | 36 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-15 | 36 | 92 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.98E-11 | 37 | 93 | No hit | No description |
SMART | SM00380 | 6.1E-25 | 37 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.468 | 37 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-20 | 37 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 74 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-38 | 149 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.19E-30 | 152 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.17E-28 | 152 | 245 | No hit | No description |
PROSITE profile | PS50863 | 14.41 | 153 | 261 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-25 | 153 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-27 | 153 | 260 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 859 aa Download sequence Send to blast |
MESSTMSAFQ AMDQGSGAGE VAAPEQLPRQ SSSSSSRFKG VVPQPNGRWG AQIYDRHTRV 60 WLGTFPDEGA AARAYDVAAR RYRGREAVLN FPEPEECASD GELAFLHAHS KAEVVDMLRK 120 HTYADELRQG LRRGSGVGAR TRPTPAWARE QLFEKTVTPS DVGKLNRLVV PKHHAEKHFP 180 LKRAPDAGTG GKGVLLNFED SEGKVWRFRY SYWTSSQSYV LTKGWSRFVR EKGIRAGDTV 240 TFYRSAYGQE KQLLIGFRKK QETQDEATAA AIAVESETRV VKLFGADIAT EKQSFASRSF 300 WLAGASTAAV LPAAIDGSAR NGPSEKGELR VETPVVAWNN DHPVTGSFPE LLQPSRPAGV 360 PSNGQGPTSS SPFLQFPRKA SALSKSLHHA CRWRHTYASL IAATDVEASR VRGPRPATDV 420 DGRARSSSAT NERKRRAADR QTGPINLQVI QPATWPLSPA PSSIITGRSG GWLARSSCAL 480 NVELAFMACA PSVLHRHAQQ LPDRTPALPT SGSETTSAVQ HADWLRACVW QQRPNQPSIC 540 SGTYWATSLD SLSAGLVTAW SLRVRSYGPL PLAGPKFDRF TGVDFEAECP CHPATACFPL 600 PAVRMWTEAL PVRPWRLLTS ERVKPPLLRL PPALSPLNFP HPAKPARACG LHTLFLVARL 660 AESMDEYPKC CAAPFLGSQP SLGSPFSTLT SRPAGLSIRN HNTTSTRKGK GGNGAPVFAV 720 DRLESMLARG RSKLPTPARG RGIHSLPPPS LSHSVRHRLA RSGARQVAPN HPPVPIHEDH 780 DPSIHGAWGT DLVASTAFIG VNRPPSCLLS SRRRRCFVLA KLAVWMDGGG CPILAFETCG 840 PLLRVDTLAA SIVTVSIFY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-48 | 150 | 269 | 11 | 126 | DNA-binding protein RAV1 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |