PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01349.1.g00290.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 310aa    MW: 32940.8 Da    PI: 7.2223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01349.1.g00290.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.8e-174292256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                                  +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g+
  Zmw_sc01349.1.g00290.1.sm.mk 42 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDVAARAMRGN 92
                                  69*******.**********84....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-2242100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-3042100IPR001471AP2/ERF domain
SMARTSM003804.2E-3542105IPR001471AP2/ERF domain
PROSITE profilePS5103223.0644299IPR001471AP2/ERF domain
PfamPF008471.3E-104291IPR001471AP2/ERF domain
PRINTSPR003673.2E-94354IPR001471AP2/ERF domain
CDDcd000188.16E-2249101No hitNo description
PRINTSPR003673.2E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDDAANAHLY GHVHALHHRS KRPPRAAAAV DEDGDMSPKG GRYRGVRRRP WGRFAAEIRD  60
PMSKERRWLG TFDTAEQAAC AYDVAARAMR GNKARTNFPV HATAGCWPWA PSPVAEPDHP  120
LRPFILQNLL MSSSHQGARC LLQHAGQGHG HVNPAPNRMA PPSHPRSAAA SASGVMTTPA  180
AAATSSVSPP HVATLDGDDD DDDVWDGLLK GEPPGAGLLQ DALHDFYPST RPRGAGRKPS  240
AVTDARALTK QDWNEGFRAA PPYGAGAEDV DEGGDCPMIP QGLLGDVIQF PAFVGFVTAP  300
PTAAFLGRSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2039105269ATERF1
3gcc_A6e-2039105269ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678756.19e-87ethylene-responsive transcription factor ESR2
TrEMBLA0A3L6F1F51e-85A0A3L6F1F5_MAIZE; Ethylene-responsive transcription factor ESR2
STRINGGRMZM2G120401_P013e-86(Zea mays)
STRINGGRMZM2G165257_P013e-86(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050