PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01346.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 419aa    MW: 45672.2 Da    PI: 4.6189
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01346.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.25.7e-151259249
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  +ien+  r+vtf kRr g+ K A  LS  ++a+vav++ s++gk+  +
  Zmw_sc01346.1.g00020.1.am.mk 12 FIENDKDRSVTFFKRRSGLHKAATDLSCFTGAKVAVVVESESGKVSSF 59
                                  8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-12162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.619363IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-8525IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-17973IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161259IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-82540IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-84061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MNRRPRRSGI NFIENDKDRS VTFFKRRSGL HKAATDLSCF TGAKVAVVVE SESGKVSSFG  60
TPSANPIIEA FLSGRTPADP PADDPETARI TELQDELYQL DKERLVMEKR AKQSKARFKK  120
IEETSSVRKL LDNDVEDLSA DELRELLRGL VQLGEGVNAQ VNAYSQVKVS GQGGPSLPFS  180
SSSSRLSSQI NMPPRHLPLA PLHASSQRPQ SSWERFLPSS ISRSSLLPPA IPPMHHQAQM  240
LPVPVPPGNE AHRYSYYFPQ EEPPRQVDLA PNHAYADNVD YLNPVAPPAQ KHASYTDNFN  300
LNPVAAPQVD QNDANSNDFA ADGQPPEAYQ WVPASPGNQE YHSYLRGLSV ELGLTDDSGD  360
QDAAAAAGGG GDQENVPDRA DDGMNQQADE MADDDWLNTS LWDFSTFPGD NPGGAAGNN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276