PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01330.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 317aa MW: 33222 Da PI: 8.4244

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01330.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.5	9.7e-18	39	98	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+++t eq+ +Le+l+e ++p+a+++++++ +l ++ ++V++WFqN++a+e+ Zmw_sc01330.1.g00210.1.am.mk 39 NTRWSPTMEQVAVLERLYEHgVSTPTADQIQHITGRLrehgPIEAKNVFYWFQNHKARER 98 58***************99**************999**************99 PP
2	Wus_type_Homeobox	104.7	6.1e-34	38	101	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW+Pt eQ+ +Le+ly++G+ tP++++iq+it +L+e+G ie kNVfyWFQN+kaRer kq Zmw_sc01330.1.g00210.1.am.mk 38 QNTRWSPTMEQVAVLERLYEHGVSTPTADQIQHITGRLREHGPIEAKNVFYWFQNHKARERSKQ 101 689**********************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.641	35	100	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.58E-10	37	106	IPR009057	Homeodomain-like
SMART	SM00389	5.9E-8	37	104	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-15	39	98	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.9E-7	40	98	IPR009057	Homeodomain-like
CDD	cd00086	4.35E-6	40	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEAPQGGAQG EASQATGQEA NAVSPPLSPA SAAAAAQQNT RWSPTMEQVA VLERLYEHGV 60 STPTADQIQH ITGRLREHGP IEAKNVFYWF QNHKARERSK QKQEGFAYFT RMLRRAPSLP 120 VMARPPGPLG RMPASPPELT MAPPSAAAAC SNGSAAGTHV MYAAPYYMPA PAPQASAGNA 180 GYYNLPQAHF GAAVYPRMDI TQDKHMIPTG MNQAQAAAPY NNPQRVVHPA TSGGASAGHR 240 AGRGRETLEL FPLRPTFVLP DNNAPGAAAS LTPSTPSAAS PSFSGGESVS AAGSPDSSAE 300 APPPPFYDFL GLQSADR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814413.1	5e-67	WUSCHEL-related homeobox 5-like
TrEMBL	A0A2T7DEM5	6e-72	A0A2T7DEM5_9POAL; Uncharacterized protein
STRING	Si004427m	2e-54	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7509	35	48