PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01324.1.g00280.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 272aa MW: 29053 Da PI: 10.274

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01324.1.g00280.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	190	232	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + RR+ri +++ L++l+P+ +K++ +++LekA+ Y+k Lq Zmw_sc01324.1.g00280.1.am.mk 190 AAKVRRERIAEKLKILQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 232 6689***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.316	182	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-12	183	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	184	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.82E-11	184	236	No hit	No description
SMART	SM00353	2.3E-10	188	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-6	191	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MAQASKRATA AASWKPQLRP VVYDDEHSSM SLELFGYHGV VVDGEHDADA GAAFPGGGMQ 60 LAFDVDNFKG GAGCGPANYY SWTVYGGGGS GARANSSSSS SVLSFEQAAA AGSTWMLIAP 120 PAVTRTAVRL IIIPVEKFRS WAASSRRQRR RRSVHAREVQ AAGGEKQCGG RKSKAKAAAP 180 APTKDPQSIA AKVRRERIAE KLKILQDLVP NGTKVDLVTM LEKAITYVKF LQLQVKVLAA 240 DEFWPAQGGK VPELSQVKDT LDAILSSQHS NK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	150	RRQRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819067.1	9e-85	transcription factor bHLH83-like
TrEMBL	A0A1E5W954	2e-86	A0A1E5W954_9POAL; Transcription factor bHLH83
STRING	Sb03g008290.1	8e-84	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117