PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01319.1.g00160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 186aa MW: 20660.8 Da PI: 5.3046 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 85.9 | 4.7e-27 | 13 | 102 | 6 | 95 |
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 r +P++ v+rim+++lP n+ki d+k+ +++c+sef + +t ea+ ++e r+ ++gdd++ al+ +Gf + v pl+++ Zmw_sc01319.1.g00160.1.sm.mk 13 RRIPMTTVTRIMHRALPRNSKINTDTKDAMNQCISEFTARLTHEAARVGKEESRRIMSGDDIILALGRMGFSNCVGPLTLF 93 789****************************************************************************** PP NF-YB 87 lkkyreleg 95 l++y e eg Zmw_sc01319.1.g00160.1.sm.mk 94 LRRYHESEG 102 *****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.7E-24 | 10 | 104 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.55E-20 | 13 | 111 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.5E-15 | 14 | 78 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAAGMEAPPE DFRRIPMTTV TRIMHRALPR NSKINTDTKD AMNQCISEFT ARLTHEAARV 60 GKEESRRIMS GDDIILALGR MGFSNCVGPL TLFLRRYHES EGIMPRGWQD ELASQELMSS 120 SQVVVEQQLP AAMPTVSVEL QPPELNLTLG LALPVPRDVT ELGLHEDVYK VWPRPAGPMP 180 LADGNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-20 | 13 | 99 | 6 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-20 | 13 | 99 | 6 | 92 | Transcription factor HapC (Eurofung) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14056 | 13 | 26 |