PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01319.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 361aa MW: 39496.6 Da PI: 10.2327

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01319.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	148.8	1.1e-46	45	139	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdr++Pianv+r+m++vlP +akis+dak+++qecvsefisfvt+ea+d+c+ e+rkt++++d++wa+ lGf+dy++p Zmw_sc01319.1.g00130.1.am.mk 45 REQDRLMPIANVVRVMRRVLPPHAKISDDAKDVIQECVSEFISFVTGEANDRCHGEHRKTVTAEDVVWAMERLGFDDYLAP 125 89***************************************************************************** PP NF-YB 83 lkvylkkyrelege 96 +k+y+++ r+ +g+ Zmw_sc01319.1.g00130.1.am.mk 126 IKAYVRRMRDYDGA 139 *******99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-43	42	141	IPR009072	Histone-fold
SuperFamily	SSF47113	1.41E-33	47	145	IPR009072	Histone-fold
Pfam	PF00808	9.4E-23	51	114	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.0E-13	78	96	No hit	No description
PROSITE pattern	PS00685	0	81	97	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.0E-13	97	115	No hit	No description
PRINTS	PR00615	5.0E-13	116	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MAMVPQSPIA NAPCPLAVEL EPAIPMEAAA ATEPPAPATE LVMIREQDRL MPIANVVRVM 60 RRVLPPHAKI SDDAKDVIQE CVSEFISFVT GEANDRCHGE HRKTVTAEDV VWAMERLGFD 120 DYLAPIKAYV RRMRDYDGAG RGGGDNAQTR VHVHHAPAPP LPMAAPLGVQ VQAPPVAFPN 180 SALAAHSSAP RHVSEPSATC SAVSVPLRPL TTERRRSAPR RPARRPWSSR RQTLLLVACI 240 TRTSPRLKIL IRCFAALTLP SPSWDERARR GLRRRPVVFG WSGDVCTVTA VCACRARGEE 300 ETATVLLCRW RHRALSRAAE SMRWPFGERR PTAGIAPACS RSGDPRAKNM CVAPWPLAPG 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MAMVPQSPIA NAPCPLAVEL EPAIPMEAAA ATEPPAPATE LVMIREQDRL MPIANVVRVM  60
RRVLPPHAKI SDDAKDVIQE CVSEFISFVT GEANDRCHGE HRKTVTAEDV VWAMERLGFD  120
DYLAPIKAYV RRMRDYDGAG RGGGDNAQTR VHVHHAPAPP LPMAAPLGVQ VQAPPVAFPN  180
SALAAHSSAP RHVSEPSATC SAVSVPLRPL TTERRRSAPR RPARRPWSSR RQTLLLVACI  240
TRTSPRLKIL IRCFAALTLP SPSWDERARR GLRRRPVVFG WSGDVCTVTA VCACRARGEE  300
ETATVLLCRW RHRALSRAAE SMRWPFGERR PTAGIAPACS RSGDPRAKNM CVAPWPLAPG  360
S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-44	42	135	4	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331