PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01314.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 159aa    MW: 18525.1 Da    PI: 10.072
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01314.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33.1e-26959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krie++ nrqvtfskRr+g++KKA+EL +LCda++ vi+f  tg+ly++ss
  Zmw_sc01314.1.g00130.1.sm.mkhc  9 KRIESEANRQVTFSKRRAGVFKKAKELATLCDAQIGVIVFTDTGQLYDFSS 59
                                    79***********************************************96 PP
2K-box159.9e-07841156798
                           K-box  67 skKnellleqieelqkkekelqeenkaLrkkl 98 
                                     + K++ ll+qie+  kk   +++en++L++k+
  Zmw_sc01314.1.g00130.1.sm.mkhc  84 DAKEQTLLDQIEQFNKKASIMNNENEELKRKI 115
                                     579***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.665161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-34160IPR002100Transcription factor, MADS-box
CDDcd002651.24E-36278No hitNo description
SuperFamilySSF554551.83E-29278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-24323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGRGKTVLKR IESEANRQVT FSKRRAGVFK KAKELATLCD AQIGVIVFTD TGQLYDFSSS  60
SMKSIIERYH HVKEGQQNVT SSTDAKEQTL LDQIEQFNKK ASIMNNENEE LKRKISIVRQ  120
ENNKLKEIYT NLTGKKWSQK MDQHWTFVCI DYYKSYKQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-191100191MEF2C
5f28_B2e-191100191MEF2C
5f28_C2e-191100191MEF2C
5f28_D2e-191100191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656060.14e-39PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP495e-37MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0E0LBE31e-40A0A0E0LBE3_ORYPU; Uncharacterized protein
STRINGOPUNC06G13170.12e-41(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3566034
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]