PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01311.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 337aa MW: 35637.7 Da PI: 10.811

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01311.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25	3.3e-08	21	126	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC....................................................... CS HLH 5 hnerErrRRdriNsafeeLrellPkas...................................................... 31 h+++Er RR+ri +++ L+el+P+a Zmw_sc01311.1.g00220.1.am.mk 21 HSIAERLRRERIAERMKALQELVPNANkvgaraghiyphvglldrrrapsatartgprpffllefppmsrarrlsrrttrg 101 99*********************888***********************************************99 PP ...TTS-STCHHHHHHHHHHHHHHH CS HLH 32 .kapskKlsKaeiLekAveYIksLq 55 ++ +Ka++L + ++Y+k Lq Zmw_sc01311.1.g00220.1.am.mk 102 fNPFFSATDKATMLDEIIDYVKFLQ 126 977777789***********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.58E-4	14	48	No hit	No description
PROSITE profile	PS50888	13.433	16	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.66E-12	16	44	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-13	18	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	21	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-7	22	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.66E-12	102	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-13	105	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
GAPAPPRQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKVG ARAGHIYPHV 60 GLLDRRRAPS ATARTGPRPF FLLEFPPMSR ARRLSRRTTR GFNPFFSATD KATMLDEIID 120 YVKFLQLQVL SMSRLGGAGA VAPLVADMSS ENPRDVNELF SATADGYCHA PTATAPRVPH 180 AEMPLLPSRN HRLSLHLSVH AQGRGSGGGA APAAESEGLA ATEQQVAKLM EEDMGTAMQY 240 LQGKGLCLMP VSLASAISSA TCHMRPGSLQ AGLGAAAAHR MAAAMRLPPG MNGDAVPASP 300 SLSVLTAQSA MPNGVGADGE ASQQQQQAKD AASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	30	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799597.1	9e-67	glycine, alanine and asparagine-rich protein-like
Swissprot	Q9LSQ3	6e-36	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A3L6QMS8	8e-76	A0A3L6QMS8_PANMI; BHLH transcription factor
TrEMBL	A0A3L6TFC4	7e-76	A0A3L6TFC4_PANMI; BHLH transcription factor
STRING	Pavir.Ba01914.1.p	9e-65	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]