PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01311.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 535aa MW: 56050.6 Da PI: 10.8252

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01311.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	28.6	3.3e-09	235	254	4	23
ZF-HD_dimer 4 vrYkeClkNhAaslGghavD 23 +Y+eC++NhAaslGgha+D Zmw_sc01311.1.g00090.1.am.mk 235 PKYRECRRNHAASLGGHAYD 254 58*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	9.0E-6	236	254	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.94E-16	320	390	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-27	324	391	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.9E-22	332	388	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
LPDGLPAAAT NSSRLRPARR AVPCRDKCHL PASTEHPSPR GGGCLAIASG FRCAISHRTD 60 PFVVIARIVV VPARRRRGRA AASGSMLVRS TLAGYLRPSV LHFWHLTPRR QQETCVTYFD 120 FSAAAAPLDP RSDGRRVDMH AGAVLVTLAA AAAARFHSYL LAVASPPPYL LFSPSGLDPS 180 SHANSPWLGA GGNLTLRGAM DAMDVKQYKA VVFPNGGVAK KVKPAAVAPA VVGEPKYREC 240 RRNHAASLGG HAYDEERSVS PPPSTQLHHV PVPVAQQPPP PPPSYPSAAP HMLLSLSSGA 300 PGTAMAAAAR LPAHQLTSPS SAPTPGGGAA PRKRFRTRFT AEQKQRMQEL SERLGWRLQK 360 RDEAIVDEWC RDIGVGKGVF KVWMHNNKHN FLGGHSARRS ASASAGAPTA AAAAALHNHT 420 PTAAGSAPPF HPSAPSPPPP PVLTSSSPGA TGFININGAA SSAPASYQEK INGSSSPQSA 480 RVADAVEPST GGTVRDGMGY EEEGAAFCRA GGAPNEIWAP LTLKRPARSA MAWPP

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

LPDGLPAAAT NSSRLRPARR AVPCRDKCHL PASTEHPSPR GGGCLAIASG FRCAISHRTD  60
PFVVIARIVV VPARRRRGRA AASGSMLVRS TLAGYLRPSV LHFWHLTPRR QQETCVTYFD  120
FSAAAAPLDP RSDGRRVDMH AGAVLVTLAA AAAARFHSYL LAVASPPPYL LFSPSGLDPS  180
SHANSPWLGA GGNLTLRGAM DAMDVKQYKA VVFPNGGVAK KVKPAAVAPA VVGEPKYREC  240
RRNHAASLGG HAYDEERSVS PPPSTQLHHV PVPVAQQPPP PPPSYPSAAP HMLLSLSSGA  300
PGTAMAAAAR LPAHQLTSPS SAPTPGGGAA PRKRFRTRFT AEQKQRMQEL SERLGWRLQK  360
RDEAIVDEWC RDIGVGKGVF KVWMHNNKHN FLGGHSARRS ASASAGAPTA AAAAALHNHT  420
PTAAGSAPPF HPSAPSPPPP PVLTSSSPGA TGFININGAA SSAPASYQEK INGSSSPQSA  480
RVADAVEPST GGTVRDGMGY EEEGAAFCRA GGAPNEIWAP LTLKRPARSA MAWPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	1e-19	332	390	17	75	ZF-HD homeobox family protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74