PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01305.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | FAR1 | ||||||||
Protein Properties | Length: 224aa MW: 26026.7 Da PI: 10.5428 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 35.2 | 4e-11 | 6 | 88 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY++ ++ +GF++rk++s++ g +++ Cs +g+++++ +++r+++++r g ka++ + dg+ + +++l Zmw_sc01305.1.g00130.1.sm.mk 6 NFYKTNSELAGFNIRKNRSRNG---G--RGHDYECSSSGHNSKSPGV--NRKREKTTKRKGWKAMVCAVISFDGTTVYFRIVL 81 6***************987665...3..678***********99877..8999999***********99999*********** PP FAR1 84 eHnHela 90 eHnHel+ Zmw_sc01305.1.g00130.1.sm.mk 82 EHNHELT 88 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-7 | 6 | 88 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDDAFNFYKT NSELAGFNIR KNRSRNGGRG HDYECSSSGH NSKSPGVNRK REKTTKRKGW 60 KAMVCAVISF DGTTVYFRIV LEHNHELTRT PTMTKQMRTH KFKEGPIDDM ANVMHRAKVK 120 HVNMMNVLRE SVGGSENLSM SERDIQNRRV ALARTEVYAT HQDNAMEKAI SSIFLNTFHR 180 FCRWHMLRKY KDPLSQMYNQ QLKQKDRLTS VINHPLNLAE FEAA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.J22247.1.p | 3e-40 | (Panicum virgatum) |