PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01305.1.g00130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 224aa    MW: 26026.7 Da    PI: 10.5428
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01305.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.24e-11688190
                          FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83
                                  +fY++ ++ +GF++rk++s++    g    +++ Cs +g+++++     +++r+++++r g ka++    + dg+ +  +++l
  Zmw_sc01305.1.g00130.1.sm.mk  6 NFYKTNSELAGFNIRKNRSRNG---G--RGHDYECSSSGHNSKSPGV--NRKREKTTKRKGWKAMVCAVISFDGTTVYFRIVL 81
                                  6***************987665...3..678***********99877..8999999***********99999*********** PP

                          FAR1 84 eHnHela 90
                                  eHnHel+
  Zmw_sc01305.1.g00130.1.sm.mk 82 EHNHELT 88
                                  *****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-7688IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDDAFNFYKT NSELAGFNIR KNRSRNGGRG HDYECSSSGH NSKSPGVNRK REKTTKRKGW  60
KAMVCAVISF DGTTVYFRIV LEHNHELTRT PTMTKQMRTH KFKEGPIDDM ANVMHRAKVK  120
HVNMMNVLRE SVGGSENLSM SERDIQNRRV ALARTEVYAT HQDNAMEKAI SSIFLNTFHR  180
FCRWHMLRKY KDPLSQMYNQ QLKQKDRLTS VINHPLNLAE FEAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J22247.1.p3e-40(Panicum virgatum)