PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01298.1.g00310.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 396aa    MW: 41522.4 Da    PI: 5.68
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01298.1.g00310.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.5e-18274308135
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Zmw_sc01298.1.g00310.1.sm.mkhc 274 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 308
                                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-18268318IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.571268304IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.4E-15268305IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-15270331No hitNo description
CDDcd002025.73E-14273320No hitNo description
PROSITE patternPS003440274299IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15274308IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEAATESGYY GGAGRERKGA GCVDHFDVDD LAVDDLLVLP YDDDDDEEGD GGGEAAALVD  60
VAGGGGGVVV KEEGGLGNLS TDSSTVTTAM DSCSNSFSGL ADGDFSGELC DPYEQLAELE  120
WLSTYMGEND DFATEDLQKL QLINGIPAGG FSSSAARVLP APAPHTTAAA SATTRQTGMS  180
LPEAPVPGKA RSKRFRPAPG NWSSHPLVLP PAPASPPSPA STAILPAESG VSFHFLAKKP  240
SKSSKKKDAP PSSSTAQSPC GGSVSAASAE GRRCLHCETD KTPQWRTGPM GPKTLCNACG  300
VRYKSGRLVP EYRPAASPTF VMSKHSNSHR KVLELRRQKE VQHPLAAPPQ HHHQPHVIAG  360
GLVHMQSPLL FDAPPMMVGD DFLVTHHLGP DCRQLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969927.11e-144GATA transcription factor 12
TrEMBLA0A0A9ERW11e-142A0A0A9ERW1_ARUDO; Uncharacterized protein
STRINGSi001735m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178