PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01289.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 607aa MW: 65813.6 Da PI: 9.1706

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01289.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.3	1.1e-26	330	379	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +++++kyF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl Zmw_sc01289.1.g00160.1.am.mk 330 DHIGFNEIRKYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 379 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	317	400	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-20	332	379	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MTRTFSQRAC AAARLNRGRS VRGSGSREPT NAPAAGRPHH QPPLHDRLHA LHTAVTRLDR 60 LASRIYTSAA TVTCHCRCSP ASYVRRPSNS ASALGESLVD PALLDWASSS SVVGNGDDLV 120 PAGSEEDDLL AVIAPPGPRN LEIRNSNLAS SSDHVPLLLP VPDDSSSSSA MILRNEESHR 180 LPVFPAAYDP SYYFDGLPPL PETAGGLDDP LMLQPFSDID LDAFGGADEH IKASPPADDI 240 MIVVPADRPY AAGQVAGVDG GNGDPKPVAT VADCYHPPAD SVDFGMAAMR YGERSDQASS 300 VAALPPPMPR LRHQVRMRSG TDPAGKTRLD HIGFNEIRKY FYMPITKAAR EMNVGLTVLK 360 KRCRELGVAR WPHRKMKSLK ALILNVQEMG KGMSAAAVQR ELAALETYCA LMEADPSIEL 420 TDRTKKLRQA CFKESYKRRR AASFNGKIDH IYNFGHELLQ AAQGGKLTPQ ESSGGSAGRS 480 AAAAPWRTGW RRSPPWRTRR RPRAVEVEGE AAAAPWRTGW RRSQLYCQGV MMHYIELHPH 540 RNKEQPGRIE SSASVFAALA TTSNGAARPD LLDFVPGRQH PPPPPPSHGL PHPSPLLPPL 600 LGCPHPG

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MTRTFSQRAC AAARLNRGRS VRGSGSREPT NAPAAGRPHH QPPLHDRLHA LHTAVTRLDR  60
LASRIYTSAA TVTCHCRCSP ASYVRRPSNS ASALGESLVD PALLDWASSS SVVGNGDDLV  120
PAGSEEDDLL AVIAPPGPRN LEIRNSNLAS SSDHVPLLLP VPDDSSSSSA MILRNEESHR  180
LPVFPAAYDP SYYFDGLPPL PETAGGLDDP LMLQPFSDID LDAFGGADEH IKASPPADDI  240
MIVVPADRPY AAGQVAGVDG GNGDPKPVAT VADCYHPPAD SVDFGMAAMR YGERSDQASS  300
VAALPPPMPR LRHQVRMRSG TDPAGKTRLD HIGFNEIRKY FYMPITKAAR EMNVGLTVLK  360
KRCRELGVAR WPHRKMKSLK ALILNVQEMG KGMSAAAVQR ELAALETYCA LMEADPSIEL  420
TDRTKKLRQA CFKESYKRRR AASFNGKIDH IYNFGHELLQ AAQGGKLTPQ ESSGGSAGRS  480
AAAAPWRTGW RRSPPWRTRR RPRAVEVEGE AAAAPWRTGW RRSQLYCQGV MMHYIELHPH  540
RNKEQPGRIE SSASVFAALA TTSNGAARPD LLDFVPGRQH PPPPPPSHGL PHPSPLLPPL  600
LGCPHPG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815472.1	2e-87	uncharacterized protein LOC112892548
TrEMBL	A0A368R6J4	3e-85	A0A368R6J4_SETIT; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12888	23	30