PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01284.1.g00210.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 569aa    MW: 60441 Da    PI: 4.7447
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01284.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.71.2e-901255211373
                          GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykal...ppsets 70 
                                   l +lL+++Aea+s   ++ ela+ +L rl+e++s +g+      +m+Rlaa+ft AL+  l +s +  ++     ++++++
  Zmw_sc01284.1.g00210.1.am.mk 125 LLHLLMAAAEALSGphKSWELARVILVRLKEMVSHTGStnaaasNMERLAAHFTDALQGLLDGSHPVGAAGRqaaAAQQQQ 205
                                   579**********8446667************9999966888889*****************9766544333111444444 PP

                          GRAS  71 eknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgs 149
                                   ++++ ++l+a++l++++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa+ s p   +pp+lRiT++++
  Zmw_sc01284.1.g00210.1.am.mk 206 HHHTGDVLTAFQLLQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDIAEGVQWASLMQAMISCPdgVPPPHLRITALSR 286
                                   455999**********************************************************99777799********* PP

                          GRAS 150 pesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230
                                   +  g +++++e+g+rLa fA+++g pf+f     ++ + ++  + r+ +gE l+ n+vl+          ++    ++L  
  Zmw_sc01284.1.g00210.1.am.mk 287 SGGGGSRAVQEVGRRLAAFAASIGQPFSFGQCRLDSEDRFRAATVRMVKGEILVANCVLNQAAATTTIRRSTGSVASFLAG 367
                                   7777***************************99999999********************887777555555557889**** PP

                          GRAS 231 vkslsPkvvvvveqeadh.nse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                                   + +l +kvv+vve++    ++e           F++rf+e l+ ysa+ dslea++p++s+ r  vEr++l+++i  +++ 
  Zmw_sc01284.1.g00210.1.am.mk 368 MATLGAKVVTVVEEDQGDaEKEdeesgdaaagGFVTRFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGALSR 448
                                   **************944423335688899999************************************************* PP

                          GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvsvSaW 373
                                   + ++     e ++ W e+++  GF+pv ls ++ +qa+lll  ++ dgy++ee s + +vlgWk ++L+s+S+W
  Zmw_sc01284.1.g00210.1.am.mk 449 AYRAVDGVDEAKGGWGEWMRGNGFRPVVLSCFNHSQARLLLGLFN-DGYTMEETSpNKIVLGWKAQRLLSASVW 521
                                   *********************************************.******88626777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.03999502IPR005202Transcription factor GRAS
PfamPF035144.0E-88125521IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MDVTMDDVAG ELEFSGCSST TSSSPSCSLD AGTAMYCSWN GLTPVADWAP FCSDDGGQDL  60
HGLIESMLCD DTLDDHAGLH PAMFLDEACC YSNGSGPSST TTTNPGTPVH DVDAQGDCPE  120
KGLRLLHLLM AAAEALSGPH KSWELARVIL VRLKEMVSHT GSTNAAASNM ERLAAHFTDA  180
LQGLLDGSHP VGAAGRQAAA AQQQQHHHTG DVLTAFQLLQ DMSPYMKFGH FTANQAILEA  240
VAGDRRVHIV DYDIAEGVQW ASLMQAMISC PDGVPPPHLR ITALSRSGGG GSRAVQEVGR  300
RLAAFAASIG QPFSFGQCRL DSEDRFRAAT VRMVKGEILV ANCVLNQAAA TTTIRRSTGS  360
VASFLAGMAT LGAKVVTVVE EDQGDAEKED EESGDAAAGG FVTRFMEELH RYSAVWDSLE  420
AGFPTQSRVR GLVERVILAP NIAGALSRAY RAVDGVDEAK GGWGEWMRGN GFRPVVLSCF  480
NHSQARLLLG LFNDGYTMEE TSPNKIVLGW KAQRLLSASV WAPPPMSVPP SPPEGVLQSV  540
GMAPVSGGVG RIEFDYIDSF LVEPAYAIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4913352327380Protein SCARECROW
5b3h_A2e-4913352326379Protein SCARECROW
5b3h_D2e-4913352326379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797459.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-152NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1E5V8410.0A0A1E5V841_9POAL; Nodulation-signaling pathway 2 protein
STRINGSb01g040270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]