PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01275.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 767aa    MW: 81560.5 Da    PI: 5.2642
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01275.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.83.2e-2297152156
                                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     r++ +++t++q++eLe+lF+++++p+ ++r eL+++lgL+ rqVk+WFqNrR+++k
  Zmw_sc01275.1.g00180.1.sm.mkhc  97 RKRYHRHTPQQIQELEALFKECPHPDDKQRGELSTRLGLDPRQVKFWFQNRRTQMK 152
                                     789999***********************************************999 PP
2START216.5e-08313393169
                                     HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCH.HHHHHHHHCC CS
                           START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmv.lallveelld 67 
                                     ela +a++elvk+a+ +ep+W +  ++ +++ +l  +e +++           + +ea+r+sg+v+ + +a lve+l+d
  Zmw_sc01275.1.g00180.1.sm.mkhc 313 ELAISAMDELVKMAQMDEPLWLTTISGAPNKATLNFVEYARSfvpclgmkpmgFVSEASRESGLVIINdSAALVETLMD 391
                                     57889********************88888888888877777788888****************98652679******* PP

                                     CG CS
                           START  68 dk 69 
                                     ++
  Zmw_sc01275.1.g00180.1.sm.mkhc 392 QM 393
                                     98 PP
3START132.45.1e-4239251193206
                                     EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEE CS
                           START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvt 165
                                     +m+aelq+lsplvp R+++f+R+++ql +g w++vdvS+d     p+     +++ v++++lpSg++ie+++ng++kvt
  Zmw_sc01275.1.g00180.1.sm.mkhc 392 QMKAELQVLSPLVPiREVTFLRFSKQLAEGAWAVVDVSIDGLIRGPNsattsTAGNVKCRRLPSGCVIEDTPNGYCKVT 470
                                     799*************************************87666665666799************************* PP

                                     EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                           START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                     wveh++++++++h+l+r+l++sgla+ga++w+atlqrqce+
  Zmw_sc01275.1.g00180.1.sm.mkhc 471 WVEHTEYDEASVHELYRPLLRSGLAFGARRWLATLQRQCES 511
                                     ***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-2181154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2382154IPR009057Homeodomain-like
PROSITE profilePS5007117.96194154IPR001356Homeobox domain
SMARTSM003897.4E-2195158IPR001356Homeobox domain
CDDcd000861.26E-1996154No hitNo description
PfamPF000469.9E-2097152IPR001356Homeobox domain
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PROSITE profilePS5084832.616304514IPR002913START domain
SuperFamilySSF559611.54E-24306512No hitNo description
CDDcd088751.15E-91308510No hitNo description
SMARTSM002349.9E-26313511IPR002913START domain
PfamPF018523.2E-36392511IPR002913START domain
SuperFamilySSF559613.85E-20540758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MNFGSFFNGG AGGGSGSGGM QFPYSAGFSS SPALSLGRDN AGGVLSGGAG VGADGGAMER  60
DADAENDSRS GGDHLDAMSG GGEEEDDAEP GSSGKRRKRY HRHTPQQIQE LEALFKECPH  120
PDDKQRGELS TRLGLDPRQV KFWFQNRRTQ MKTQLDRHEN SLLKQESDKL RSENVTIREA  180
MRNPTCGSCG SSALLGEVSL EEQHLRIENA RLKDEINRVY SLAAKFLNKP LPSLSGGHQL  240
PPHLSLPMPS ASLELAIGAL GGMGSMPPAT MPGSMGEFAG GVSNPLGTVI TPARATGAAP  300
PPMVGIDRSM LLELAISAMD ELVKMAQMDE PLWLTTISGA PNKATLNFVE YARSFVPCLG  360
MKPMGFVSEA SRESGLVIIN DSAALVETLM DQMKAELQVL SPLVPIREVT FLRFSKQLAE  420
GAWAVVDVSI DGLIRGPNSA TTSTAGNVKC RRLPSGCVIE DTPNGYCKVT WVEHTEYDEA  480
SVHELYRPLL RSGLAFGARR WLATLQRQCE SLAILMSPGT VSANDASVIT QEGKRSMLKL  540
ARRMTDNFCA GVSASSAREW SKLDGAAGCI GEDVRVMVRK SVNEPGEPPG VVLSAATSVW  600
VPVAPERLFN FLRNEQLRAD WDILSNGGPM QEMASVAKGQ GRGNSVSLLR AGAMSSNQSS  660
MLILQETCTD ASGSMVVYAP VDIPAMQLVM NGGDSTYVAL LPSGFAILPD GPSTEHNTGG  720
GSLLTVAFQI LVNSQPTAKL TVESVETVNN LISCTVNKIT NALPCDA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457484.10.0homeobox-leucine zipper protein ROC5
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLC5XEA60.0C5XEA6_SORBI; Uncharacterized protein
STRINGSb03g008090.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]