PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01266.1.g00300.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 506aa MW: 55032.7 Da PI: 6.6589

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01266.1.g00300.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	211	264	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k Zmw_sc01266.1.g00300.1.am.mk 211 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 264 4568999**********************************************9 PP
2	HD-ZIP_I/II	123.8	8.4e-40	210	299	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrl+ eqv++LE++Fe +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L Zmw_sc01266.1.g00300.1.am.mk 210 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKADNDALV 290 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLree 90 +++++L++e Zmw_sc01266.1.g00300.1.am.mk 291 SHNKKLQAE 299 ****976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-18	189	267	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.28E-19	203	268	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	206	266	IPR001356	Homeobox domain
SMART	SM00389	1.3E-17	209	270	IPR001356	Homeobox domain
CDD	cd00086	4.65E-17	211	267	No hit	No description
Pfam	PF00046	5.9E-15	211	264	IPR001356	Homeobox domain
PRINTS	PR00031	3.3E-5	237	246	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	241	264	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.3E-5	246	262	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.1E-11	266	300	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MAERIISCAS AAAQVEGALL LHHGMAEGAT CGTDRSSYVV SSGHVHVPHA NARGPPDSSG 60 EGAEPCTLHV SLCVGLSLLA ATPIRPMHPA PDDAVGYSFL MPMASNGMAS SPPSFFPPNF 120 LLQMQQTPLD HDPQEHHHSH LHPPPLHHPH HNPFLPSSQC PSLQDFQGRA PMLGKRPMYG 180 ADVGAGDDLN GGGDEASKDE LSDDGSQAGE KKRRLNVEQV RTLEKNFELG NKLEPERKLQ 240 LARALGLQPR QVAIWFQNRR ARWKTKQLEK DYDALKRQLD AVKADNDALV SHNKKLQAER 300 SQQKGCWKRR RWELAFHLRA DVVLTAFVES CCSKAGAASE WPATAPPGLC SFLPLSLDAT 360 LTQSIYSSWL LRIVLALKGG REAGSELINL NKETEASCSN RSENSSEINL DISRTPPSEG 420 PVDPPAHQHQ HAGNGAGGMI PFYPSVGRSA GLDFDQLLHS SSGPKMEQHG SGDGVQAPEQ 480 TSFGNLLCCV DEPPPFWPWA DHQHFH

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MAERIISCAS AAAQVEGALL LHHGMAEGAT CGTDRSSYVV SSGHVHVPHA NARGPPDSSG  60
EGAEPCTLHV SLCVGLSLLA ATPIRPMHPA PDDAVGYSFL MPMASNGMAS SPPSFFPPNF  120
LLQMQQTPLD HDPQEHHHSH LHPPPLHHPH HNPFLPSSQC PSLQDFQGRA PMLGKRPMYG  180
ADVGAGDDLN GGGDEASKDE LSDDGSQAGE KKRRLNVEQV RTLEKNFELG NKLEPERKLQ  240
LARALGLQPR QVAIWFQNRR ARWKTKQLEK DYDALKRQLD AVKADNDALV SHNKKLQAER  300
SQQKGCWKRR RWELAFHLRA DVVLTAFVES CCSKAGAASE WPATAPPGLC SFLPLSLDAT  360
LTQSIYSSWL LRIVLALKGG REAGSELINL NKETEASCSN RSENSSEINL DISRTPPSEG  420
PVDPPAHQHQ HAGNGAGGMI PFYPSVGRSA GLDFDQLLHS SSGPKMEQHG SGDGVQAPEQ  480
TSFGNLLCCV DEPPPFWPWA DHQHFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	266	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465782.1	1e-107	homeobox-leucine zipper protein HOX21
Swissprot	A2XD08	6e-78	HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
TrEMBL	A3AEK5	1e-128	A3AEK5_ORYSJ; Uncharacterized protein
STRING	TRIUR3_12807-P1	1e-125	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94