PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01266.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 85aa MW: 9663.9 Da PI: 8.5173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.5e-09 | 11 | 52 | 14 | 54 |
HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 d+iN+ +++L+ellP++s + ++ + s + L++++ YIksL Zmw_sc01266.1.g00170.1.sm.mk 11 DEINDLISKLQELLPESSrRRNASRSSASKLLKETCSYIKSL 52 68**************6647777889***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.972 | 1 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-7 | 11 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-9 | 11 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-9 | 11 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MSGRRGRISD DEINDLISKL QELLPESSRR RNASRSSASK LLKETCSYIK SLHREVGDLS 60 DRLSELMSTM DNDSPQAEII RSLLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917019.1 | 4e-40 | transcription factor ILI5 | ||||
Refseq | XP_015613962.1 | 5e-40 | transcription factor ILI3-like | ||||
Swissprot | A2XD15 | 7e-34 | ILI3_ORYSI; Transcription factor ILI3 | ||||
Swissprot | Q10R47 | 7e-34 | ILI3_ORYSJ; Transcription factor ILI3 | ||||
TrEMBL | A0A1E5VT24 | 1e-45 | A0A1E5VT24_9POAL; Transcription factor ILI3 | ||||
STRING | OGLUM10G09100.1 | 2e-39 | (Oryza glumipatula) | ||||
STRING | OMERI10G06270.1 | 2e-39 | (Oryza meridionalis) | ||||
STRING | ORUFI10G09690.1 | 2e-39 | (Oryza rufipogon) | ||||
STRING | OS10T0403800-00 | 2e-39 | (Oryza sativa) | ||||
STRING | ORGLA10G0079400.1 | 2e-39 | (Oryza glaberrima) | ||||
STRING | OBART10G09290.1 | 2e-39 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 |