PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01253.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 27915.5 Da PI: 6.4389 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 44.1 | 4.4e-14 | 46 | 84 | 1 | 39 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk 39 ++rlrWt++LHerFveav+qLGG++k ++i e++k++ Zmw_sc01253.1.g00100.1.sm.mkhc 46 RQRLRWTNDLHERFVEAVTQLGGPDKIQASKISEALKLQ 84 58************************9999999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.55E-5 | 45 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-12 | 45 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.0E-10 | 47 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 1.3E-23 | 76 | 120 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MHSTKPEASF GQAHTDSVIN QQQMVLAGND MGPSNGANSN TNMAARQRLR WTNDLHERFV 60 EAVTQLGGPD KIQASKISEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLEKIIEEQR 120 RFSGVKPEMP LAGASVTVSS NEQFPDSERT EPSTPAPKSE SPTQGASNRD NGGRTEAPKS 180 PSHDDSLSHH EPLTPDSNHQ PGSPTASPNH ERAAKRQRAS STEFSQGDCS LTGHIFESSS 240 GSEFQQYSMS YSGH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152613.1 | 1e-107 | MYB-CC type transfactor | ||||
Refseq | XP_023156307.1 | 1e-107 | MYB-CC type transfactor isoform X1 | ||||
Swissprot | Q9SJW0 | 8e-40 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A1D6I1M9 | 1e-122 | A0A1D6I1M9_MAIZE; Myb family transcription factor PHL7 | ||||
STRING | GRMZM2G173943_P02 | 1e-106 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 |