PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01251.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 20664.6 Da PI: 7.8275 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.9e-05 | 9 | 31 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +Cg++F r +L H r H Zmw_sc01251.1.g00130.1.sm.mk 9 HKCDICGRVFARGVQLGGHKRAH 31 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.28E-6 | 5 | 36 | No hit | No description |
PROSITE profile | PS50157 | 12.487 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.4E-9 | 9 | 33 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 9 | 35 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MQLMQEQGHK CDICGRVFAR GVQLGGHKRA HYGKKIEYKK RKKQCVEPPP QLLDPPAPLA 60 APATAVCMAD LTRSMDMQTG QPSHSSPPPQ VVAPPAPLAS SAAVCMVDPT GNQTEQPSDS 120 SPQPAVTILR LFGTNIMPGA PAVQEGNGIM PQAEAPEEGS GATEDLPSTR RQSLNIYHAY 180 GFCLRKVQIT QDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 42 | KKRKK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP33219 | 3 | 4 |