PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01250.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 853aa    MW: 92527.1 Da    PI: 5.435
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01250.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.2e-20196251156
                                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     +++ +++t +q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Zmw_sc01250.1.g00160.1.am.mkhc 196 KKRYHRHTLHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 251
                                     688899***********************************************998 PP
2START26.51.4e-09411484369
                                     HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                           START   3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 
                                       +a++elv++a++++p+W       +++++e+ + f+ + +      ++ea+r+s+vv+m+   lve+l+d++
  Zmw_sc01250.1.g00160.1.am.mkhc 411 VVAAMDELVQMAQLDAPLWGMGTigGQLDEEEYARMFPGGIGprqydLRSEASRDSAVVIMTRDSLVEILMDTM 484
                                     6789***************99888*************88888******************************98 PP
3START140.22.1e-4448359393206
                                     EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
                           START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                                     +m++e+q++splvp R+++fvRy++q ++g wvivdvS+ds ++ p      +++++pSg+li++++ng+skvtwvehv
  Zmw_sc01250.1.g00160.1.am.mkhc 483 TMSMEFQVPSPLVPtRESYFVRYCKQNPDGMWVIVDVSLDSLRPSPA----LKCRRRPSGCLIQEMPNGYSKVTWVEHV 557
                                     599*****************************************995....9999************************ PP

                                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                     ++++r++h+l+++lv+sgla+gak+wv tl+rqce+
  Zmw_sc01250.1.g00160.1.am.mkhc 558 EVDDRSVHNLYKPLVNSGLAFGAKRWVGTLDRQCER 593
                                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22178251IPR009057Homeodomain-like
SuperFamilySSF466891.71E-18183251IPR009057Homeodomain-like
PROSITE profilePS5007116.455193253IPR001356Homeobox domain
SMARTSM003892.8E-18194257IPR001356Homeobox domain
PfamPF000462.3E-17196251IPR001356Homeobox domain
CDDcd000862.34E-18196251No hitNo description
PROSITE patternPS000270228251IPR017970Homeobox, conserved site
PROSITE profilePS5084827.838400596IPR002913START domain
SuperFamilySSF559613.95E-29401595No hitNo description
CDDcd088752.68E-92404592No hitNo description
SMARTSM002348.7E-35409593IPR002913START domain
PfamPF018523.7E-37483593IPR002913START domain
Gene3DG3DSA:3.30.530.202.7E-5488591IPR023393START-like domain
SuperFamilySSF559611.15E-24615843No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
LLRGASFLAG ISACDLLLAG EAPELDRIRD LSHAILPSRL QIPFFSAGRR VEAGIDQRYD  60
LDLAPPPASF FHGPVALVRA RTLALDLLPR VSPALPSSVM TPGRMIGRNG VAYGSSSAMS  120
LNQVDLLDSQ HLQQAFQQHL FDQIPAPTLD SGDNMIHGHA DTLVDEFESK SCSENPDGTS  180
GEDGQLEDPN QRPNKKKRYH RHTLHQIQEM EAFFKECPHP DDKQRKELSR ELGLEPLQVK  240
FWFQNKRTQM KASAITLDTL YYIALNQHER QENAQLRAEN DKLRSENMRY KEALSTASCP  300
SCGGPAALGE MSFDEHHLRL ENARLRDEID RISGIAAKHV GKPMVSFPLL PSPLAAAAAR  360
SPLDLAGAYG VQPPSLTADH IFGAGAGAGD LLRSVSTGHL DADKPMIVEL VVAAMDELVQ  420
MAQLDAPLWG MGTIGGQLDE EEYARMFPGG IGPRQYDLRS EASRDSAVVI MTRDSLVEIL  480
MDTMSMEFQV PSPLVPTRES YFVRYCKQNP DGMWVIVDVS LDSLRPSPAL KCRRRPSGCL  540
IQEMPNGYSK VTWVEHVEVD DRSVHNLYKP LVNSGLAFGA KRWVGTLDRQ CERLASAMAS  600
NIPNGDLGVI TSIEGRKSML KLAERMVTSF CGGVTASAAH QWTTLSGSGA EDVRVMTRKS  660
VDDPGRPPGI VLNAATSFWI PIPPKRVFDF LRDETSRSEW DILSNGGAVQ EMAHIANGRD  720
HGNCVSLLRV NSANSNQSNM LILQESCTDA SGSYVVYAPV DVVAMNVVLN GGDPDYVALL  780
PSGFAILPDG PPGAAAEGES PGGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIACTVE  840
RIKAAICGEG NLQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972697.10.0homeobox-leucine zipper protein ROC1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLK3YGB70.0K3YGB7_SETIT; Uncharacterized protein
STRINGSi013285m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]