PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01249.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 334aa    MW: 36291.8 Da    PI: 9.6501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01249.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1968117255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Zmw_sc01249.1.g00070.1.sm.mkhc  68 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 117
                                     69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.93368125IPR001471AP2/ERF domain
SMARTSM003804.4E-3768131IPR001471AP2/ERF domain
CDDcd000183.70E-3268126No hitNo description
Gene3DG3DSA:3.30.730.101.9E-3268126IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2268126IPR016177DNA-binding domain
PRINTSPR003672.0E-116980IPR001471AP2/ERF domain
PfamPF008475.2E-1269117IPR001471AP2/ERF domain
PRINTSPR003672.0E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MCGGAILSSF IRPSGAAAAA KKKKKKQQSR RIVRLRPRHG SYYDVITPKS AQHDAPAAKS  60
AKRSRKNQYR GIRQRPWGKW AAEIRDPSKG VRVWLGTYNT AEEAARAYDA EARKIRGKKA  120
KVNFPDEGLN GHKSILKPSA ANGTTLAPPS KTCADEAFGD PRTGDNDLFA MFAFNDTKVP  180
VKPAETAAFL APLKPLVPTE KFGTNMLSDQ SSNSYGSSSD FGWDDDTMTP DYTSVFAPTN  240
AVPTYAEPAY LQDGPSKKMR NNYGVAVPKG NGAPNLTQNM SGFDPEMKYV QMPYIESSSD  300
VSMDSLLQDD VAQDGASNGD LWSLDELLMA AGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2068125260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2068125563ATERF1
3gcc_A4e-2068125563ATERF1
5wx9_A1e-19681271474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800946.11e-158ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9P8101e-166A0A0A9P810_ARUDO; Uncharacterized protein
STRINGPavir.J01991.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142