PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01246.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 393aa MW: 41873.7 Da PI: 5.8695

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01246.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.6	9.6e-08	307	348	8	54
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L Zmw_sc01246.1.g00080.1.sm.mk 307 AARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 348 569****************966......*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.066	299	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-11	304	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-13	304	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.52E-11	305	353	No hit	No description
SMART	SM00353	5.8E-13	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-5	308	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MVLSESSWSG CCDGSNGVFY GCNMSVLERL VLDEALAAAI LELQQQGIPA AARPAPKVPG 60 SGGVGDSAAF PTMATPTLEY ADVDVDVLQR QQQHRHQDAT GMAADYDLTP AKAAVVAVTS 120 AFTNFTCAAL GDGCRLGDPP VLLCDNETSI TTTASMAMTV TTTSQRCEEG RDGGGRKQRR 180 PSRKRMAADT ASAAPTQESS LYSLLASTTP GDGGIQITFS SSAPAAGNKR SKPSLSSGSS 240 SISFDGRNAG GEDPAYEPDR EALAQVKEMI YRAAAMRPVS LGSELEQASE RPHRRNVRIS 300 SDPQSVAARQ RRERISERLR VLQKLVPGGA KMDTASMLDE AANYLRFLKS QVRDLQTLDR 360 RNYGDTNVNS TTMTGPMSYS NNDSIVPAFA SWQ

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MVLSESSWSG CCDGSNGVFY GCNMSVLERL VLDEALAAAI LELQQQGIPA AARPAPKVPG  60
SGGVGDSAAF PTMATPTLEY ADVDVDVLQR QQQHRHQDAT GMAADYDLTP AKAAVVAVTS  120
AFTNFTCAAL GDGCRLGDPP VLLCDNETSI TTTASMAMTV TTTSQRCEEG RDGGGRKQRR  180
PSRKRMAADT ASAAPTQESS LYSLLASTTP GDGGIQITFS SSAPAAGNKR SKPSLSSGSS  240
SISFDGRNAG GEDPAYEPDR EALAQVKEMI YRAAAMRPVS LGSELEQASE RPHRRNVRIS  300
SDPQSVAARQ RRERISERLR VLQKLVPGGA KMDTASMLDE AANYLRFLKS QVRDLQTLDR  360
RNYGDTNVNS TTMTGPMSYS NNDSIVPAFA SWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	313	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814680.1	1e-106	transcription factor LATE FLOWERING-like
TrEMBL	A0A1E5ULC6	1e-112	A0A1E5ULC6_9POAL; Transcription factor bHLH87
STRING	Pavir.Eb02113.1.p	1e-104	(Panicum virgatum)
STRING	Si003753m	1e-103	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106