PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01240.1.g00230.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 414aa    MW: 44633.4 Da    PI: 6.3479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01240.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-103133693589
                                   EEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                            B3  35 tltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                    l + d++   +W++k++y  ++ks++y+l+  + eFvk ++L++gD++v++ ++r++
  Zmw_sc01240.1.g00230.1.sm.mk 313 ILEMDDLELpDVWKFKYRYwpNNKSRMYILE-STGEFVKRHKLEAGDVFVIYQHKRTG 369
                                   455555333589*******887888888888.9******************9544433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.003287382IPR003340B3 DNA binding domain
CDDcd100176.08E-12296370No hitNo description
Gene3DG3DSA:2.40.330.103.6E-14297377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-11298374IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-7323367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MADATGSSSG AGAGAGAATG HGDLGRGVTQ GQYQIYLTSS TNGIAPNAAN IYPPTHQYPI  60
GLIPAQRPMN SSPIAAPPQQ LVPPPQYHVV QSQPPPTAGR YQHQDYPAYG NTAPSTTPVG  120
FAGWRMYSNT LMSFSQPAPL SGGGGGGNSN ISVVNSNGFH QNSSSYATTM WTNYVPSNQP  180
YYTNYAPAAT INPVLQAPAI QNINNHQERD LGFAPSFGAT APTVPSIHYE VMPQRTTNSS  240
TAQLFQEVKN STFRTSGPGG EIEGSEASEE QDPAPELEAQ NQLGQGFRDI NATDNTRDAE  300
ANLPALIDKD GIILEMDDLE LPDVWKFKYR YWPNNKSRMY ILESTGEFVK RHKLEAGDVF  360
VIYQHKRTGR HVARAVKAIP QSSNLNLLEC QCMREGRSSE ECGFAVSAPP PKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-2329738925116B3 domain-containing transcription factor FUS3
6j9b_D1e-2329738925116B3 domain-containing transcription factor FUS3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963379.17e-93putative B3 domain-containing protein Os04g0676650
TrEMBLA0A3L6Q9284e-97A0A3L6Q928_PANMI; Putative B3 domain-containing protein
STRINGPavir.Gb00057.1.p2e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835