PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01238.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22347.3 Da    PI: 9.5177
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01238.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF793.3e-251261251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl  ++s
  Zmw_sc01238.1.g00180.1.am.mkhc 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLSHFAS 61
                                    89********************************************9986 PP
2K-box34.11.1e-1281145973
                           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                                      ee ++   ++   +L++e+ +   ++R++ Ge+L++L++k+Lq+Le+ Le++l+ + ++K   +
  Zmw_sc01238.1.g00180.1.am.mkhc  81 SEEPHQPAGDRACGRLREELAEASLKLRQMRGEELHRLNVKQLQELEKSLESGLSAVLKTKVSRM 145
                                     5555566667778899999999999********************************99887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.254363IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-32362IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-28577IPR002100Transcription factor, MADS-box
CDDcd002651.90E-36576No hitNo description
PRINTSPR004042.1E-23525IPR002100Transcription factor, MADS-box
PfamPF003196.6E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-232540IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-234061IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.25886168IPR002487Transcription factor, K-box
PfamPF014861.2E-792145IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAGKRERMAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLSHFA  60
SSSMKQIIDR YDSHSKTLQR SEEPHQPAGD RACGRLREEL AEASLKLRQM RGEELHRLNV  120
KQLQELEKSL ESGLSAVLKT KVSRMARVEM QLGADSEVVY EEGQSSESVT NTSYPRAPLD  180
NDDSSDTSLR LGLPHFNSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18586377MEF2C
5f28_B5e-18586377MEF2C
5f28_C5e-18586377MEF2C
5f28_D5e-18586377MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307342.11e-108MADS-box transcription factor 47-like isoform X2
RefseqXP_021307343.11e-108MADS-box transcription factor 47-like isoform X2
SwissprotQ5K4R01e-100MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A3S6K2U01e-108A0A3S6K2U0_BAMML; MADS47
STRINGPavir.Ia04527.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]