PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc01237.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 699aa MW: 74409.8 Da PI: 10.4006

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc01237.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.4e-10	374	409	3	32
HHHHHHHHHHHHHHHHHHHHHHCTSCCC........ CS HLH 3 rahnerErrRRdriNsafeeLrellPkas......k 32 r+h+e+ErrRR+riN +++Lr+llP+ + Zmw_sc01237.1.g00020.1.am.mk 374 RSHSEAERRRRQRINGHLARLRSLLPNTTkdalplT 409 78************************9644555550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.696	371	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-10	374	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-8	374	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.47E-6	374	404	No hit	No description
SuperFamily	SSF47459	2.98E-10	375	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-5	377	534	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.98E-10	508	538	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-10	511	532	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	3.9E-4	581	624	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MISSSRALAG PGPAAALNSH WARLAAYNGC RWCRRRHHRI RRADRSFPFA IDRHRSTKQT 60 CTISSALALV STLDSSEGSC ERVAGRAGGA TGSRHAEGRN HSVSFSKAGP GLRLRVGCRT 120 KSKARLRRAG YSCTTRYARG EGRGGVRGIR RDSRLDHYPT GSPPRCEKAA RHILQKATPM 180 ADCLKAMEYT PVVQEKKKPQ EHQSTETNPP RIHQQPRGST PLSIDRLISS ADRSIGMWEA 240 GGLHGSHEAL LLQAAGSGAG DVVHGQASGL LPCTWLGPAT APSYPYMAPH APPAPGHLFG 300 VDDAAAGPFG FGGGGAGVGV GLFGLDPPSH QHHGMVADAG SSRVVSGLLG TLQAELGRMT 360 AKEILDAKAL AASRSHSEAE RRRRQRINGH LARLRSLLPN TTKDALPLTR RHAREGLVGN 420 RAPCGMRDRS SSPCKTRVHA RVRAHHLSLT HGAATHQKLS SGRSRPGRAC KGCSHARDFC 480 KLFLHARMPS SHQTRPLDRL LLSPTATTTL VTDKASLLAE VIEHVKELKR QTSAVLDAAE 540 RQEDQQGDAP SAAQQLLRLL PTEADELAVD AAEDGDGRLV DRAGLIPDVA RALAALRLRA 600 RRAEIATLGG RVRNMLLITA DDDEAEADGD DDVDGDGCEG AGAAQSHRRH ELVAAVEEAL 660 RGVMDSKAAS SGDACSSSAG SGSLKRQRMS GGAYEQGSF

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MISSSRALAG PGPAAALNSH WARLAAYNGC RWCRRRHHRI RRADRSFPFA IDRHRSTKQT  60
CTISSALALV STLDSSEGSC ERVAGRAGGA TGSRHAEGRN HSVSFSKAGP GLRLRVGCRT  120
KSKARLRRAG YSCTTRYARG EGRGGVRGIR RDSRLDHYPT GSPPRCEKAA RHILQKATPM  180
ADCLKAMEYT PVVQEKKKPQ EHQSTETNPP RIHQQPRGST PLSIDRLISS ADRSIGMWEA  240
GGLHGSHEAL LLQAAGSGAG DVVHGQASGL LPCTWLGPAT APSYPYMAPH APPAPGHLFG  300
VDDAAAGPFG FGGGGAGVGV GLFGLDPPSH QHHGMVADAG SSRVVSGLLG TLQAELGRMT  360
AKEILDAKAL AASRSHSEAE RRRRQRINGH LARLRSLLPN TTKDALPLTR RHAREGLVGN  420
RAPCGMRDRS SSPCKTRVHA RVRAHHLSLT HGAATHQKLS SGRSRPGRAC KGCSHARDFC  480
KLFLHARMPS SHQTRPLDRL LLSPTATTTL VTDKASLLAE VIEHVKELKR QTSAVLDAAE  540
RQEDQQGDAP SAAQQLLRLL PTEADELAVD AAEDGDGRLV DRAGLIPDVA RALAALRLRA  600
RRAEIATLGG RVRNMLLITA DDDEAEADGD DDVDGDGCEG AGAAQSHRRH ELVAAVEEAL  660
RGVMDSKAAS SGDACSSSAG SGSLKRQRMS GGAYEQGSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020402268.1	3e-46	transcription factor bHLH30
TrEMBL	A0A1D6KP73	7e-45	A0A1D6KP73_MAIZE; Transcription factor AIG1
STRING	Sb07g021170.1	2e-43	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33654	3	4