PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01236.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 458aa MW: 50509.4 Da PI: 10.0904 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 4e-52 | 22 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhP+dee++++yL++kv ++++++ ++i e+di+k+ePw+Lp+k+k +ekewyf+s + ky++g+r+nratk+g Zmw_sc01236.1.g00050.1.sm.mk 22 LPPGFRFHPSDEEIITFYLRPKVINNRFTA-HAIGEADINKCEPWELPEKAKMREKEWYFYSLKGLKYPSGSRANRATKAG 101 79*************************999.88***************99999**************************** PP NAM 82 yWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+e++++++++ vg+kktLvfykgrap+g ktdWvmhe+rl Zmw_sc01236.1.g00050.1.sm.mk 102 YWKATGKDREIYQATSKKpvlVGMKKTLVFYKGRAPTGDKTDWVMHEFRL 151 *************85554566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-59 | 17 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.344 | 22 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 23 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MADHHQQQWR TSDDTNSGRL KLPPGFRFHP SDEEIITFYL RPKVINNRFT AHAIGEADIN 60 KCEPWELPEK AKMREKEWYF YSLKGLKYPS GSRANRATKA GYWKATGKDR EIYQATSKKP 120 VLVGMKKTLV FYKGRAPTGD KTDWVMHEFR LDGSGKLPHP AASSSSSTSM VMKSSSQEEW 180 VICRIYLKSS SVKKAPTPSV DIASMVGDVE QRSMSFPLPM QFPMGPGDFA GGSNTLRHIM 240 DPSPFFYSAT AISTTISPTI LPMADMGSYD LPMDTTHFQD PIAPAQPILY NQTGIGPVED 300 GRLMGRLDSG STSIVLRDPR MSAQQTNVDI SGEVLARKTG SLIAADPEPV IAYAVAEMRS 360 ARHHGRTKGR TEQKDPFAPP NRRAAGRQPR SSALLRRLDL QPSVSQQPDT AGVHAYLAAA 420 YVASSRSAVP APLSRDGYRA ACCRIRSYRA GRQALGPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 19 | 194 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 19 | 194 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 19 | 194 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 19 | 194 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-45 | 19 | 194 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-45 | 19 | 194 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-45 | 19 | 194 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-45 | 19 | 194 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-45 | 19 | 194 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-45 | 19 | 194 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-45 | 19 | 194 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-45 | 19 | 194 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-45 | 19 | 194 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 19 | 194 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679478.1 | 1e-101 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | K3ZUK3 | 1e-102 | K3ZUK3_SETIT; Uncharacterized protein | ||||
STRING | Si030284m | 1e-102 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |