PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc01228.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 348aa MW: 37419.1 Da PI: 10.3554 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.9e-19 | 181 | 235 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k Zmw_sc01228.1.g00070.1.sm.mkhc 181 RKKLRLSKDQAAVLEESFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTK 235 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.9 | 1.8e-40 | 181 | 270 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 +kk+rlsk+q+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+r Zmw_sc01228.1.g00070.1.sm.mkhc 181 RKKLRLSKDQAAVLEESFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCFESLTEENRR 259 69***************************************************************************** PP HD-ZIP_I/II 80 LekeveeLreel 91 L++ev+eLr +l Zmw_sc01228.1.g00070.1.sm.mkhc 260 LQREVAELR-AL 270 ********9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.1E-22 | 16 | 150 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 166 | 231 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-18 | 169 | 238 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 177 | 237 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-17 | 179 | 241 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.37E-16 | 181 | 238 | No hit | No description |
Pfam | PF00046 | 8.2E-17 | 181 | 235 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 212 | 235 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.4E-21 | 237 | 280 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.9E-11 | 237 | 271 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MMVNASRGEE QYHNLGLGLS LSLGIATAAA PVEPPPQQPQ HQQKSALSVA PVPAQQPRQC 60 CNGFSAGFFF SPSTGIDRSL FERKPQQQQA APAPAAACHG HEMPFLRGID VNRAPAGEIS 120 RRGSCSEDEE PGASSPNSTL SRLSGKRGAP ARSGGREGDR TPRAGGGGSD DEDSGAGGGS 180 RKKLRLSKDQ AAVLEESFKE HNTLNPKQKA ALAKQLNLKP RQVEVWFQNR RARTKLKQTE 240 VDCEFLKRCF ESLTEENRRL QREVAELRAL KLXXXXRPPR SPCAPPASAS RAPPPTAAAP 300 GAPPPRAPCS SMARPVGRDW LLPQRFSVTD TAGSTFVQVA RLVTGAYY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 185 | SRKKLRL |
2 | 229 | 237 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}. | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983649.1 | 1e-119 | homeobox-leucine zipper protein HOX1 isoform X2 | ||||
Swissprot | Q40691 | 1e-66 | HOX1_ORYSI; Homeobox-leucine zipper protein HOX1 | ||||
Swissprot | Q7XC54 | 1e-66 | HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1 | ||||
TrEMBL | A0A3L6THC5 | 1e-118 | A0A3L6THC5_PANMI; Homeobox-leucine zipper protein HOX1 isoform X2 | ||||
STRING | Pavir.Ia02217.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |