PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01225.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 616aa    MW: 65249.3 Da    PI: 4.6372
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01225.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS463.21.5e-1412356121374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   lv++Ll+cAeav+++++++a+al++++  las++g +m+++aayf eALa+r++r        ++p ++s  +  ++++a+
  Zmw_sc01225.1.g00170.1.sm.mk 235 LVHALLACAEAVQQENFSAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------FRPAADS--SLLDAAFAD 305
                                   689****************************************************........3333333..344444444 PP

                          GRAS  82 kl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                    l   f+e +P+lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+
  Zmw_sc01225.1.g00170.1.sm.mk 306 LLhahFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQ 386
                                   33445**************************************************************************** PP

                          GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                                   ++g++La+fA++++v+f+++ lva +l+dle+ +L+++        E++aVn+v+++hrll+++++le+    vL +v+ +
  Zmw_sc01225.1.g00170.1.sm.mk 387 QVGWKLAQFAHTINVDFQYRGLVAATLADLEPFMLQLEGeekddePEVIAVNSVFEMHRLLAQPGALEK----VLGTVRAV 463
                                   ***********************************88776777889***********************....******** PP

                          GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleak.......lpres.eerikvErellgreivnvvacegaerre 307
                                   +Pk+v+vveqea+hns+ Fl+rf+++l+yys++fdsle +        p+++  +++++++++lgr+i+nvvacegaer+e
  Zmw_sc01225.1.g00170.1.sm.mk 464 RPKIVTVVEQEANHNSGLFLDRFTQSLHYYSTMFDSLEGGgsgqsdaSPAAAaGTDQVMSEVYLGRQICNVVACEGAERTE 544
                                   *************************************888667666533333699************************** PP

                          GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   rhetle+Wr r+++aGF+p++l+++a+ qa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Zmw_sc01225.1.g00170.1.sm.mk 545 RHETLEQWRGRFGRAGFEPLHLGSNAYRQASTLLALFAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 612
                                   *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120417.0E-3639113IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.8E-3239119No hitNo description
PROSITE profilePS5098567.547209591IPR005202Transcription factor GRAS
PfamPF035145.2E-139235612IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MKREYQEAGG SSGGGSSDLG SFEDKMMVVP AAEQDEEVDE LLAALGYKVR SSDMADVAQK  60
LEQLDMAMGM GGVTGAAADD GFVSHLATDT VHYNPSDLSS WVESMLSELN APPQPLPPAP  120
VPPTPLLASA SSTVPSVGGG GYFDPPPPVD SSSSTYALKP IPSPVAAPAD PSTDSAPEPK  180
RMRTGGDSVS SSSSSSSSLG GGGARSSVVE AAPPASNAPA VPVVMVDTQE AGIRLVHALL  240
ACAEAVQQEN FSAAEALVKQ IPMLASSQGG AMRKVAAYFG EALARRVYRF RPAADSSLLD  300
AAFADLLHAH FYESCPYLKF AHFTANQAIL EAFAGCRRVH VVDFGIKQGM QWPALLQALA  360
LRPGGPPSFR LTGVGPPQPD ETDALQQVGW KLAQFAHTIN VDFQYRGLVA ATLADLEPFM  420
LQLEGEEKDD EPEVIAVNSV FEMHRLLAQP GALEKVLGTV RAVRPKIVTV VEQEANHNSG  480
LFLDRFTQSL HYYSTMFDSL EGGGSGQSDA SPAAAAGTDQ VMSEVYLGRQ ICNVVACEGA  540
ERTERHETLE QWRGRFGRAG FEPLHLGSNA YRQASTLLAL FAGGDGYRVE EKDGCLTLGW  600
HTRPLIATSA WRLTAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6124261126378Protein SCARECROW
5b3h_A4e-6124261125377Protein SCARECROW
5b3h_D4e-6124261125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354393.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLH9A2920.0H9A292_ERATE; Reduced height-2
STRINGGRMZM2G144744_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]