PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01201.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 129aa    MW: 14753.6 Da    PI: 7.294
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01201.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.52.5e-45396295
                         NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84
                                  ++qd++lPianv+rimk vlP +akisk aket+qec +ef++fvt+eas++c+r++rktingdd+++a+ +lG+++y+++++
  Zmw_sc01201.1.g00140.1.sm.mk  3 SAQDNLLPIANVGRIMKDVLPPQAKISKSAKETIQECTTEFVGFVTGEASERCRRDRRKTINGDDICHAMRSLGLDHYADAMR 85
                                  579******************************************************************************** PP

                         NF-YB 85 vylkkyreleg 95
                                   yl++yre e+
  Zmw_sc01201.1.g00140.1.sm.mk 86 RYLQRYRESEE 96
                                  ********885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.4E-41399IPR009072Histone-fold
SuperFamilySSF471131.86E-335101IPR009072Histone-fold
PfamPF008082.2E-24972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.1E-143654No hitNo description
PRINTSPR006154.1E-145573No hitNo description
PRINTSPR006154.1E-147492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MNSAQDNLLP IANVGRIMKD VLPPQAKISK SAKETIQECT TEFVGFVTGE ASERCRRDRR  60
KTINGDDICH AMRSLGLDHY ADAMRRYLQR YRESEELAAA FNRNSGREIQ IDVRDELSIF  120
RGSEQCQDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-37593492Transcription factor HapC (Eurofung)
4g92_B2e-37593492Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266909.12e-73uncharacterized protein LOC101027253
SwissprotO040271e-42NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2T7DBX64e-73A0A2T7DBX6_9POAL; Uncharacterized protein
STRINGGRMZM2G169884_P018e-73(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]